Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5053 ATGAGTTCCAAAAGGGCAATAAATATAAATCTAGCACTCTCCTCTACCTTACTGCTGCTCCTTTTGGTTGGTTTTGCAAGCTCAAACCTAAACCAAGACGCAGCAGAATGCACCTACAAACTCATTGGTATATCTTATTGCTCTCCCTATGTCTTTGATCAAGCCAATGGCGCCCCATCCAAAGATTGCTGCACTGGCATCAAAGAGATTGATCACAACGGCAAGAGATGCCTCTGTTTACTCTTCCAAGACGTGAGATTCAATGTCCTCCGTGCTCTCAAGTTACCAGGTGCTTGTAAAACACCCGTCAACTTTACTCAGTGTGTTGATGTTTTGCAATTGGCACCTCAATCTCGAGAAGCTAAAGTATTTGAGGGATATGACAAAGGCATAAGCCTAAATTTTTCCACCCCAGCTCCCTCTCCCAGTCCTAGTGTAGCCTTTGTTAATGCTGGCAATGGAACAAGCACAAGCACTCAAGATAAGAACGATGTGTGGGGAAAGAGATGGCTGGTAGTGAAGGTGCTATGTTTTATTTTTCCATTTGTTTTCATCTCCCATTTCCTCCTTCTAGTCTGA 579 0.4352 MSSKRAININLALSSTLLLLLLVGFASSNLNQDAAECTYKLIGISYCSPYVFDQANGAPSKDCCTGIKEIDHNGKRCLCLLFQDVRFNVLRALKLPGACKTPVNFTQCVDVLQLAPQSREAKVFEGYDKGISLNFSTPAPSPSPSVAFVNAGNGTSTSTQDKNDVWGKRWLVVKVLCFIFPFVFISHFLLLV* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5053 192 PANTHER PROTEASE INHIBITOR/SEED STORAGE/LTP FAMILY PROTEIN 11 190 - -
Lja3g5053 192 CDD AAI_LTSS 47 100 - -
Lja3g5053 192 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 35 110 IPR036312 -
Lja3g5053 192 SMART aai_6 47 108 IPR016140 -
Lja3g5053 192 Pfam Probable lipid transfer 25 108 IPR016140 -
Lja3g5053 192 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 11 190 IPR043325 -
Lja3g5053 192 Gene3D - 34 108 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5053 Lja-Chr3 92698556 92699948 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5053 5 191 Acyl Lipid Metabolism Gene Families AT2G44290 29.756 3.89e-28 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5053 - - lja:Lj3g3v0300640.1 283.878