Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5037 ATGTTCATGAGCTTCTTCAAGCAGCTCATGGCAATGCAGAATGTACTTCTGCTGCTACTCCTTCTGGCATGTTCTTTGATAGGTTCTGCTACAGCCTCTGTGTCCTATGACTCCAAAGCTATCACCATTAATGGCCAGAGAAGAATACTCATTTCTGGATCCATTCACTATCCAAGAAGCACCCCTGAGATGTGGCCAGATCTTATCCAGAAGGCCAAGGAAGGAGGTTTGGATGTGATTCAGACCTATGTTTTCTGGAATGGGCATGAACCTTCACCTGGCCAATATTATTTTGAAGGGAACTATGATCTGGTGAAGTTCATAAAGTTGGTGCAGCAAGCAGGCCTCTATGTTAATCTAAGGATTGGTCCTTATGTCTGTGCTGAGTGGAACTTTGGGGGCTTCCCTGTTTGGCTTAAGTACATTCCAGGTATTAGCTTCAGAACAGACAATGGCCCATTTAAGTTTCAAATGCAAAAATTTACCGAGAAGATTGTCGATATGATGAAAGCAGAGAGGTTATATGAGTCTCAGGGAGGTCCAATAATTCTTTCCCAGATTGAAAATGAATATGGACCTGAGGAGTATGAAATTGGTGCTGCTGGTAAAACCTATACTAAGTGGGCAGCAGATATGGCTCTAGGACTTGGTACTGGGGTTCCATGGATCATGTGCAAGCAAGATGATGCTCCTGATCCTATTATTAACACCTGCAATGGCTTCTATTGTGATTATTTCTCTCCAAACAAGGATTACAAACCAAAGATGTGGACAGAAGCTTGGACTGGCTGGTATACTGAGTTTGGAGGTCCCGTTCCTTATCGACCTGCTGAAGACTTGGCATTTTCAGTTGCAAGGTTTATACAGAAAGGGGGATCATTTGTCAATTATTACATGTACCATGGGGGAACAAATTTTGGTCGAACTGCCGGTGGTCCCTTCATCGCTACAAGCTATGATTATGATGCACCTCTTGATGAATATGGATTGCTCAGGCAACCAAAGTGGGGTCATCTGAAGGATTTACACAGAGCAATAAAACTTTCTGAACCTGCATTAGTATCAGGAGATCCGACTGTAACACGGATTGGAAACTATCAAGAGGCTCATGTCTTCAAATCAAACTCGGGAGCCTGTGCTGCGTTTCTAGCAAACTATAACCCAAAATCTTATGCAACAGTGGCATTTGGGAATATGCATTACAACTTGCCTCCTTGGTCTATAAGCATTCTTCCCGACTGCAAGAACACCGTTTATAACACTGCAAGGGTTGGTTCCCAGAGAGCCCAGATGAAGATGACCAATGTTCCTATTCATGGTGGACTCTCTTGGCAAGGGTTCACTGAAGAAACAGCCTCGACTGATGACAGTTCCTTCACTGTGACTGGCCTATTAGAGCAGTTAAATACAACAAGAGATTTATCCGACTACTTGTGGTACTCCACGGATGTCGTGATTGACCCCAATGAAGAATTTTTGAGGAATGGAAAGAATCCTGTTCTTACAGTGTTATCTGCTGGGCATGCTATGCATGTTTTTATCAATGGCCAGCTATCAGGAACTCTATACGGAAGCTTAGAATTTCCCAAACTGACATTTAGCGAGAGTGTGATGCTCAGACCTGGTGTTAACAAAATCTCTCTTTTAAGCGTTGCAGTTGGACTCCCGAATGTTGGCCCTCATTTTGAGACATGGAATGCTGGTGTTCTTGGTCCAATTACATTAAACGGTCTCAATGAGGGGAGAAGGGACTTGACTTGGCAGAAATGGTCTTACAAGGTTGGTCTTAAAGGTGAAACCCTGAGTCTTCATTCTCTCGGTGGAAGTTCGTCAGTGGAGTGGGTTCAGGGGTCTTTAATTGTTCAGAGGCAGCAATTGACTTGGTTCAAAACTACTTTCGATGCCCCGGATGGAGTTGCACCATTGGCTTTAGACATGGGTAGCATGGGCAAGGGTCAAGTGTGGTTAAATGGACAGAGTCTTGGCCGCTACTGGCCTGCTTATAAAGCATCTGGTACCTGTAATAACTGTGACTATGCTGGAACGTACAATGAGAATAAATGCAGAAGTAACTGCGGCGAGGCTTCCCAAAGATGGTATCATGTTCCTCATTCATGGCTGAAGCCAACTGGGAATTTATTGGTTGTGTTTGAAGAATTGGGTGGAGATCCCAATGGGATCGTTTTGGTTAGACGCGATATAGATAGTGTGTATGCTGATATTTATGAATGGCAGCCAAATGTTATTAGTTATCAGGTGCAAGCTTCTGGCAAATCTAGCAAACCAGTGAGACCAAAAGCACATTTATCATGTGGCCCTGGACAAAAAATCTCATCAATCAAATTTGCTAGTTTTGGTACTCCGGTTGGGTCTTGTGGAAACTTCCAAGAAGGAAGCTGCCATGCTCACAAGTCTTATGATGCCTTAAAAAGGAATTGTGTTGGACAGAACTTTTGCAAAGTAACAGTGTCGCCTGATAATTTCGGAGGAGATCCATGTCCAAATGTCATGAAGAAACTCTCAGTGGAGGCCATTTGTTCCTGA 2544 0.4359 MFMSFFKQLMAMQNVLLLLLLLACSLIGSATASVSYDSKAITINGQRRILISGSIHYPRSTPEMWPDLIQKAKEGGLDVIQTYVFWNGHEPSPGQYYFEGNYDLVKFIKLVQQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGISFRTDNGPFKFQMQKFTEKIVDMMKAERLYESQGGPIILSQIENEYGPEEYEIGAAGKTYTKWAADMALGLGTGVPWIMCKQDDAPDPIINTCNGFYCDYFSPNKDYKPKMWTEAWTGWYTEFGGPVPYRPAEDLAFSVARFIQKGGSFVNYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLSEPALVSGDPTVTRIGNYQEAHVFKSNSGACAAFLANYNPKSYATVAFGNMHYNLPPWSISILPDCKNTVYNTARVGSQRAQMKMTNVPIHGGLSWQGFTEETASTDDSSFTVTGLLEQLNTTRDLSDYLWYSTDVVIDPNEEFLRNGKNPVLTVLSAGHAMHVFINGQLSGTLYGSLEFPKLTFSESVMLRPGVNKISLLSVAVGLPNVGPHFETWNAGVLGPITLNGLNEGRRDLTWQKWSYKVGLKGETLSLHSLGGSSSVEWVQGSLIVQRQQLTWFKTTFDAPDGVAPLALDMGSMGKGQVWLNGQSLGRYWPAYKASGTCNNCDYAGTYNENKCRSNCGEASQRWYHVPHSWLKPTGNLLVVFEELGGDPNGIVLVRRDIDSVYADIYEWQPNVISYQVQASGKSSKPVRPKAHLSCGPGQKISSIKFASFGTPVGSCGNFQEGSCHAHKSYDALKRNCVGQNFCKVTVSPDNFGGDPCPNVMKKLSVEAICS* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5037 847 Pfam Beta-sandwich domain in beta galactosidase 353 424 IPR041392 -
Lja3g5037 847 Pfam Glycosyl hydrolases family 35 41 345 IPR031330 -
Lja3g5037 847 Gene3D - 616 738 - -
Lja3g5037 847 PRINTS Glycosyl hydrolase family 35 signature 256 271 IPR001944 GO:0004553|GO:0005975
Lja3g5037 847 PRINTS Glycosyl hydrolase family 35 signature 624 638 IPR001944 GO:0004553|GO:0005975
Lja3g5037 847 PRINTS Glycosyl hydrolase family 35 signature 44 61 IPR001944 GO:0004553|GO:0005975
Lja3g5037 847 PRINTS Glycosyl hydrolase family 35 signature 177 192 IPR001944 GO:0004553|GO:0005975
Lja3g5037 847 PRINTS Glycosyl hydrolase family 35 signature 293 308 IPR001944 GO:0004553|GO:0005975
Lja3g5037 847 PRINTS Glycosyl hydrolase family 35 signature 120 139 IPR001944 GO:0004553|GO:0005975
Lja3g5037 847 PRINTS Glycosyl hydrolase family 35 signature 651 667 IPR001944 GO:0004553|GO:0005975
Lja3g5037 847 PRINTS Glycosyl hydrolase family 35 signature 313 329 IPR001944 GO:0004553|GO:0005975
Lja3g5037 847 PRINTS Glycosyl hydrolase family 35 signature 65 83 IPR001944 GO:0004553|GO:0005975
Lja3g5037 847 SUPERFAMILY Galactose-binding domain-like 588 751 IPR008979 -
Lja3g5037 847 PANTHER BETA-GALACTOSIDASE RELATED 12 841 IPR001944 GO:0004553|GO:0005975
Lja3g5037 847 Gene3D - 760 847 IPR043159 -
Lja3g5037 847 Pfam Galactose binding lectin domain 769 846 IPR000922 GO:0030246
Lja3g5037 847 SUPERFAMILY Galactose-binding domain-like 408 579 IPR008979 -
Lja3g5037 847 Gene3D Glycosidases 28 350 - -
Lja3g5037 847 Gene3D - 456 591 - -
Lja3g5037 847 SUPERFAMILY (Trans)glycosidases 34 349 IPR017853 -
Lja3g5037 847 ProSiteProfiles SUEL-type lectin domain profile. 761 847 IPR000922 GO:0030246
Lja3g5037 847 PANTHER BETA-GALACTOSIDASE 12 841 - -
Lja3g5037 847 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 179 191 IPR019801 GO:0004553|GO:0005975
Lja3g5037 847 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5037 Lja-Chr3 92537679 92544226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5037 10 847 Glycoside Hydrolase AT3G13750 79.236 0.0 1417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5037 - - gmx:100811187 1587.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5037 3 92537679 92544226 Lja3g5037 3 92537679 92544226 ECH
Lja3g5037 3 92537679 92544226 Lja3g1492 3 15984387 15990539 PCT