Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5034 ATGGCGAAGAGTGAGAGTTGTTGTTCCACTCAGCTTATTGATGGAGATGGCGTATTCAATGTTACCGGTATTGAAAACTTCATGAAAGAGGTTAACTTACGCGAATGTGGACTTTCCTATGCAGTAGTTTCCATTATGGGACCACAAAGTAGTGGCAAGAGCACGCTAGTAAATCATTTGTTCAATACCAACTTCAGGGAGATGGATGCATTTAAGGGAAGGTCTCAAACAACCAAAGGAATTTGGATGGCTAAATGTATTGGCATAGAGCCTTGTACACTTGTGATGGATTTGGAGGGCACAGATGGAAGAGAACGTGGAGAGGATGATACTACATTTGAAAAGCAGAGTGCACTATTTGCTTTGGCGTTTTCTGATATAGTGCTAATAAACATGTGGTGTCATGACATTGGCCGTGAGCAAGCTGCAAATAAGCCGCTTTTGAAAACTGTGTTTGAGGTCATGATGAGATTGTTTAGTCCACGCAAAACAACATTGTTGTTTGTGATACGTGATAAAACAAAGACACCACTTGAAAATTTAGATCCTGTTCTGCGAGAAGATATTCAGAAGATATGGGACTCCGTTCCTAAACCACAGGCTCATAAGGAAACCCCACTAAGTGAATTTTTCAATGTTCAAGTTGTTGCTCTTTCTAGTTTTGAAGAAAAGGAGGAGCAATTTAGGGAGCAGGTTGCCAACTTGAGGCAGCGATTCTATCATTCTATTGCTCCTGGTGGGCTTGCGGGGGATCGAAGGGGAGTAGTTCCTGCTTCAGGCTTTTCATTTAGTGCTCAACAAATCTGGAAAGTTATTAAGGAGAACAAGGATCTTGACCTTCCTGCACACAAGGTAATGGTTGCTACTGTAAGATGTGAAGAAATTGCCAATGAAAAATATGCCCTTTTCTCTGCAAATGAGGACTGGTGTCAGTTGGAAGAAGCTGTGAAATCTGGCCCTGTCTCTGGATTTGGGAAAAAACTCAATTCACTCCTTGGTTCTTATCTTTCAGAGTATGATGTTGAAGCCACTTATTTTGATGAGGGCGTGAGAACTGCAAAACAAAAGCAGCTTCAAGAAAAATTGCTGCAACTTGTCCAACCAACATTCCAAATTGCACTAGGACATGTAAGGTCTGGGACTTTGGATAAGTTCAAGGAAGCATTTGAAAAGGCTTTGAATGGAGGGGATGAGTTTTCTGCTGCTGCTAATAATTGCATAGGGGCTCATATGGCTCAGTTTGATGAAGGATGTGCAGATGTTGTTGTTGAAATGACAAAATGGGATACATCTAAAGTAAGGGAGAAACTGCGGCATGATATTGATGTACATGTTGCGTCTGTACGTGCAGCTAAGCTTTCAGAACTTACTTCATCATATGAGGAAAAACTGAAAGAGGCCTTGTCTGGACCTGTTGAAACTCTTCTGGATGGAGCTAACAGTGATACTTGGCCATCAATAAGGAAGCTTCTTAATCGTGAGAGTGAATCAGCTGTTTCTGGGTTCTCTGCTGCACTTACCAGATTTGATATGGATGAACAAACAAGAAAGAACATGATTGTGAGTTTAGAGGATTATGCAAAGGGTGTTATTGAAACAAAGGCTAGGGAAGAAGCTAGCAGAGTTCTAATCCGTATGAAGGATCGGTTTATGACATTGTTTAGTCATGATTCTGATTCAATGCCTCGTATTTGGACGGGAGACGAAAATGTTCGAGCCATTACCAAGAGTGCCCGCGCAGCTTCCATGAAGTTGCTATCTGTAATGGCTGTAATTCGTTTGGAAGATGATGACGATAATGATATTGTTGAGAAAACGTTGGCAGTTGCACTGGCGGATTCATCAAGCAGTTCGGGTAAAGATAGAAGCATCAGTGCAGTTGATCCACTGGCTTCCAGCACTTGGGAACAGGTACCATCCTCAAAAACATTGATTACACCTGTCCAGTGCAAATCTTTGTGGAGGCAATTCAAGATGGAGACAGAATGTGTTGTCACTCAGGCCATTTCTGCTCAGGAGGCTAACAAGCGTAGTAACAACTGGTTACCTCCACCATGGGCGATTGTTGCTTTGATTATTCTGGGATTTAATGAATTTATGACACTTTTAAGAAATCCCTTGTACTTAGGTCTCATCTTTGGTGGTTATCTTCTCATTAAGGCCCTATGGGTGCAGCTTGACGTTGCGGGTGAATTTCGCCATGGAGCTCTTCCGGGAATCTTATCCTTGTCTAGCAAGTTTTTTCCAACTATCATGAACCTTATCAGAAAACTATCAGAGGCGGGACAGAGCCCTGCAACTAACAATCCTCGGAGAAATCCATCACAAAGCAATAGCAATGTTACTACTGCTGGTAGTGCTATATCATCTAGTACTTCATCTGATGCATTTTCATCCAACAAAGGAACTGAGTATACTGCTAGTCCATCAAAATATGAGTAG 2442 0.4189 MAKSESCCSTQLIDGDGVFNVTGIENFMKEVNLRECGLSYAVVSIMGPQSSGKSTLVNHLFNTNFREMDAFKGRSQTTKGIWMAKCIGIEPCTLVMDLEGTDGRERGEDDTTFEKQSALFALAFSDIVLINMWCHDIGREQAANKPLLKTVFEVMMRLFSPRKTTLLFVIRDKTKTPLENLDPVLREDIQKIWDSVPKPQAHKETPLSEFFNVQVVALSSFEEKEEQFREQVANLRQRFYHSIAPGGLAGDRRGVVPASGFSFSAQQIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYALFSANEDWCQLEEAVKSGPVSGFGKKLNSLLGSYLSEYDVEATYFDEGVRTAKQKQLQEKLLQLVQPTFQIALGHVRSGTLDKFKEAFEKALNGGDEFSAAANNCIGAHMAQFDEGCADVVVEMTKWDTSKVREKLRHDIDVHVASVRAAKLSELTSSYEEKLKEALSGPVETLLDGANSDTWPSIRKLLNRESESAVSGFSAALTRFDMDEQTRKNMIVSLEDYAKGVIETKAREEASRVLIRMKDRFMTLFSHDSDSMPRIWTGDENVRAITKSARAASMKLLSVMAVIRLEDDDDNDIVEKTLAVALADSSSSSGKDRSISAVDPLASSTWEQVPSSKTLITPVQCKSLWRQFKMETECVVTQAISAQEANKRSNNWLPPPWAIVALIILGFNEFMTLLRNPLYLGLIFGGYLLIKALWVQLDVAGEFRHGALPGILSLSSKFFPTIMNLIRKLSEAGQSPATNNPRRNPSQSNSNVTTAGSAISSSTSSDAFSSNKGTEYTASPSKYE* 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5034 813 Coils Coil 218 238 - -
Lja3g5034 813 CDD GBP 34 242 - -
Lja3g5034 813 Pfam Sey1 three-helix bundle domain 323 760 IPR046758 -
Lja3g5034 813 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 277 IPR027417 -
Lja3g5034 813 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 37 252 IPR030386 GO:0005525
Lja3g5034 813 PANTHER PROTEIN SEY1 3 789 IPR008803 -
Lja3g5034 813 PANTHER PROTEIN ROOT HAIR DEFECTIVE 3 HOMOLOG 3 789 - -
Lja3g5034 813 Hamap Protein SEY1 [SEY1]. 9 763 IPR008803 -
Lja3g5034 813 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 46 281 - -
Lja3g5034 813 Gene3D - 22 268 IPR027417 -
Lja3g5034 813 MobiDBLite consensus disorder prediction 762 813 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5034 Lja-Chr3 92515684 92523882 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5034 K22698 - gmx:100797516 1310.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5034 3 92515684 92523882 Lja3g1494 3 16022553 16031987 PCT