Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4966 ATGGCGTTGAACAATGGCGTCCCCAGCACCGGCACCGGCCTGATTGTCAGCTTCGGCGAGATGCTGATCGACTTCGTCCCCACCGTCTCCGGCGTGTCCCTTGCAGAAGCCCCGGGATTCCTCAAAGCCCCCGGCGGCGCACCCGCCAACGTCGCCATCGCTGTTTCCCGACTCGGCGGCAACGCCGCCTTCGTCGGGAAGCTTGGCGATGACGAGTTCGGTCACATGCTCGCCGGGATCTTGAAGGAGAACGGCGTCCGCGCCGACGGGATCACGTTCGATGAAGGCGCGCGTACCGCACTGGCGTTTGTCACCCTACGCGCCGACGGGGAGCGTGAGTTCATGTTTTATAGAAACCCCAGCGCCGACATGCTCCTCAAACCTGAAGAACTCAACCTCGAACTCATCAGATCTGCAAAAGTTTTCCACTATGGTTCCATAAGCTTGATCGTGGAGCCATGTAGATCAGCACACTTGAAGGCAATGGAGGTTGCCAAGGATGCTGGATGTCTTCTCTCCTATGACCCTAACCTCCGCCTGCCGTTGTGGCCGTCAGCAGATGAAGCTCGCAAGCAAATTCTGAGCATCTGGGACAAGGCTGATCTGATTAAGGTCAGTGACAATGAGCTGGAGTTCCTCACTGGAAGTGACAAAATTGATGATGAATCTGCTTTGTCATTGTGGCACCCCAACTTGAAATTACTCCTTGTCACTCTCGGTGAACATGGTTCAAAATACTACACCAAGAATTTCCGTGGAACAGTAGAAGGTTATCATGTCAACACGGTTGATACAACAGGCGCCGGTGATTCCTTTGTTGGTTCTCTGTTGTCCAAGATTGTTGATGATCAATCCATTCTTGAAGATGAGCCAAGGTTAAGAGAAGTGCTCAAGTATTCAAATGCATGTGGAGCAATTACAACTACTAAAAAGGGAGCAATTCCAGCCCTTCCCAAGGAAGAGGATGTGCTGAAGCTCATCAATGGAGCATAA 993 0.5237 MALNNGVPSTGTGLIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVSRLGGNAAFVGKLGDDEFGHMLAGILKENGVRADGITFDEGARTALAFVTLRADGEREFMFYRNPSADMLLKPEELNLELIRSAKVFHYGSISLIVEPCRSAHLKAMEVAKDAGCLLSYDPNLRLPLWPSADEARKQILSIWDKADLIKVSDNELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEHGSKYYTKNFRGTVEGYHVNTVDTTGAGDSFVGSLLSKIVDDQSILEDEPRLREVLKYSNACGAITTTKKGAIPALPKEEDVLKLINGA* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4966 330 Gene3D - 13 330 IPR029056 -
Lja3g4966 330 Pfam pfkB family carbohydrate kinase 14 319 IPR011611 -
Lja3g4966 330 PANTHER HEXOKINASE FAMILY MEMBER 20 329 - -
Lja3g4966 330 PANTHER BNAA04G18320D PROTEIN 20 329 - -
Lja3g4966 330 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 45 69 IPR002173 GO:0016773
Lja3g4966 330 PRINTS Ribokinase signature 235 246 IPR002139 GO:0016301
Lja3g4966 330 PRINTS Ribokinase signature 40 59 IPR002139 GO:0016301
Lja3g4966 330 PRINTS Ribokinase signature 195 210 IPR002139 GO:0016301
Lja3g4966 330 SUPERFAMILY Ribokinase-like 15 326 IPR029056 -
Lja3g4966 330 CDD bac_FRK 14 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4966 Lja-Chr3 91875488 91878766 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4966 K00847 - gmx:100803713 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4966 3 91875488 91878766 Lja3g0600 3 5906377 5909210 PCT