Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4906 ATGGCTTCATATACTCCAAAGAATATCCTTATTACTGGGGCAGCTGGATTCATTGCCTCCCATGTTGCCAACCGGCTTGTCAGGACCTATCCAGACTACAAAATTATTGTGCTCGATAAGCTCGATTATTGTTCTAGTCTGAAGAACCTCCTTCCTTCCAAATCATCTCCTAACTTCAAGTTTGTGAAGGGGGACATTGGTAGTGCTGATCTTGTCAACTACCTTCTTATCACCGAGTCCATTGATACTATAATGCACTTTGCTGCTCAAACACATGTGGACAACTCCTTTGGTAATAGCTTTGAGTTCACCAAGAACAACATATATGGAACTCATGTCCTATTAGAAGCCTGCAAGGTGACTGGACAAATCAAAAGGTTCATTCATGTGAGCACAGATGAGGTCTATGGGGAGACAGACGAGGATGCTGTTGTGGGAAACCATGAGGCTTCCCAACTTCTTCCCACAAACCCATACTCTGCAACAAAGGCTGGGGCAGAAATGCTTGTCATGGCATATGGTACTTCATATGGTTTACCTGTTATCACAACTCGTGGGAACAATGTTTACGGGCCAAATCAGTTTCCTGAGAAGTTAATTCCAAAGTTCATCCTACTGGCCATGCAAGGAAAGACTCTTCCAATTCATGGGGATGGTTCTAATGTGAGGAGTTACTTATATTGTGAAGATGTTGCTGAGGCATTTGAAGTTATCCTTCACAAGGGAGAGGTTGGCCATGTCTACAATATTGGGACAAAGAAGGAAAGGAGAGTTATTGATGTGGCCAAAGATATATGCAATCTTTTCTCAAAGGATCCAGAAAAAGATATAAAATTTGTAGATAATAGACCATTTAATGACCAGAGGTACTTTCTCGACGATCAAAAGCTGAAGGTTTTGGGTTGGTCTGAGAGGACCACTTGGGAAGAGGGCCTGAAGAAAACCATGGAATGGTATACCCAAAATCCTGATTGGTGGGGTGATGTCACGGGAGCGTTGCTTCCTCATCCAAGGATGCTGATGATGCCTGGTGGGATGGAGAGACATTCTGAAGGTGACAAACCTGCTTCCTTGGCTTCAAGTAATACTCGAATGGTTGTTCCGGCATCCAAGAGCAATGGTACTCAGCAGAAACCTCCTTTTAAGTTCTTGATCTATGGTAGAACAGGGTGGATTGGAGGTTTGCTGGGGAAACTGTGCGATAAGCAAGGAATTCCATATGAATATGGAAAGGGGCGCCTAGAGGATCGCTCCTCAGTGGTGGCTGACATTAATAATGTGAAACCAACCCATGTTTTTAATGCTGCAGGCGTGACTGGTAGACCCAATGTCGATTGGTGTGAATCTCACAAAACAGAAACCATCAGAACTAATGTGGCTGGCACTTTAACATTGGCTGATGTTTGCAGAGAGAATGGGATCTTGGTGATAAATTATGCTACTGGGTGCATATTTGAGTATGATGCAGCGCATCCGGAAGGCTCTGGCATTGGTTTTAAGGAGGAAGACAAGCCCAATTTCATTGGCTCTTTCTATTCCAAAACTAAAGCTATGGTTGAGGAGCTCTTGAGAGAGTATGACAATGTATGCACCCTCAGGGTTCGCATGCCGATTTCATCTGACCTGAGCAACCCGCGCAACTTCATTACGAAGATTTCTCGTTATAACAAGGTAGTAAACATTCCAAACAGCATGACTATTTTGGATGAGCTTCTGCCAATTTCAATTGAGATGGCAAAGAGGAACCTGAGGGGAATCTGGAACTTCACAAACCCTGGAGTGGTGAGCCACAACGAGATCCTTGAGATGTACAGGGATTACATTGACCCCAACTTCAAGTGGGTTAACTTCAATCTGGAAGAGCAAGCCAAGGTGATTGTTGCTCCTCGAAGCAACAATGAACTGGATGCTTCCAAATTGAATACGGAATTCCCAGAATTGCTTCCCATCAAGGAGTCACTAATCAAGTATGTCTTCGAGCCAAACAAGAAATAA 1995 0.4376 MASYTPKNILITGAAGFIASHVANRLVRTYPDYKIIVLDKLDYCSSLKNLLPSKSSPNFKFVKGDIGSADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGTSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKTLPIHGDGSNVRSYLYCEDVAEAFEVILHKGEVGHVYNIGTKKERRVIDVAKDICNLFSKDPEKDIKFVDNRPFNDQRYFLDDQKLKVLGWSERTTWEEGLKKTMEWYTQNPDWWGDVTGALLPHPRMLMMPGGMERHSEGDKPASLASSNTRMVVPASKSNGTQQKPPFKFLIYGRTGWIGGLLGKLCDKQGIPYEYGKGRLEDRSSVVADINNVKPTHVFNAAGVTGRPNVDWCESHKTETIRTNVAGTLTLADVCRENGILVINYATGCIFEYDAAHPEGSGIGFKEEDKPNFIGSFYSKTKAMVEELLREYDNVCTLRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYRDYIDPNFKWVNFNLEEQAKVIVAPRSNNELDASKLNTEFPELLPIKESLIKYVFEPNKK* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4906 664 Gene3D - 371 664 - -
Lja3g4906 664 CDD dTDP_GD_SDR_e 7 324 IPR005888 GO:0008460|GO:0009225
Lja3g4906 664 CDD dTDP_HR_like_SDR_e 382 654 - -
Lja3g4906 664 Pfam RmlD substrate binding domain 382 552 IPR029903 -
Lja3g4906 664 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 380 654 IPR036291 -
Lja3g4906 664 Pfam GDP-mannose 4,6 dehydratase 10 315 IPR016040 -
Lja3g4906 664 Gene3D - 200 322 - -
Lja3g4906 664 PANTHER UDP-GLUCOSE 4,6-DEHYDRATASE 1 663 - -
Lja3g4906 664 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 333 IPR036291 -
Lja3g4906 664 Gene3D - 9 313 - -
Lja3g4906 664 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 1 663 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4906 Lja-Chr3 91141324 91143407 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4906 8 319 Miscellaneous Gene Families AT4G00110 26.946 3.11e-20 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4906 K12450 - gmx:100785885 1270.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4906 3 91141324 91143407 Lja3g4906 3 91141324 91143407 ECH