Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4888 ATGGCGACACCAAAACCTATATCACCCTTCAGACTCTCCTCCCTCCTCCGATCACAGAAGGACCCATCCGTCGCATTCCAACTCTTCCTCAACCCCAACCCCCAAACCAACCACCGCCCCTTCCGCCACTCCCTCCTCTCCTACGACCTCATCATCACCAAACTCGGCCGCGCCAAAATGCTCCCCGAAATGGAACAAGTCCTCCACCAACTCCACCTCGACACGCGCCACCGCGTCCCGGAGCCCCTCCTCTGCCACGTCATCACTTTCTACGCCCGCGCCCGCCAACCCTCACGCGCCGTCCAGACCTTCCTCTCCATCCCCTCCTTCCGCTGTCAACGGACCCTCAAGTCCTTCAACACGCTCCTCCACGCGCTACTCACCTGCCGCCAGTTCGATGCTGTGACCGAGCTCGCCGCCCGCGCCGGTGAGTTCGGAGCCCCGGACGCCTGCACCTACAACATCCTCATCCGGGCGAGTTGCCTCCGCGGCCACGCGGATCGTGCATTTGAACTGTTCGATGAAATGCGCAGCCGAGGTGTCCGCCCTGATCAGGCCACGTTCGGGACGTTAATCCACAGGCTGTGCGAGAATTCGCGGCTGCGCGAGGCGTTTGAGCTGAAAGAGGAGATGTTTAGGGAGTTCAAGTTGGAGGGGTGTGTAACTATTTACACCAACTTGATCAAGGGGGTTTGCAAGATTGGTGAGCTCAGTTGGGCTTTTAGGATCAAGGATGAAATGGTGAAGAAAGGGTTGAAGCTGGATGCTGCTTTGTACAATACCTTGATCAATGCACTTTTTAAGGCAGGGAAGAAAGAGGAGGCGTTGCGAGTTTTGGAGGAAATGAGGGAGGGTGGTTGCGAATGGAATTCGGTTACTTGTAATGTCATGATCGGGGAGTATTGTAGGGAGAACAATTTTGAAGAAGCTTATAGGATTTTGGATGGGGTGGAAGGTGTAAAGCCTGATGTTATTGGTTACAATGTGTTTCTTGGTTGGTTGTGTAAGGAAGGGAAATGGAGTGAAGCAATGGATTTGTTTCATGACATGCCGCGACGCGGGTGTGCTCCTGATGTTGTGACGTACCGTACACTGTTTGATGGGCTTTGCCGGTGGAGGCAGTTCCGGGAAGCTGTGGTTGTTTTGGATGAGATGATGTTTAAAGGGTATGCTCCCCTTTCTAAAAATTTGAATGCATTTGTCAGTGAGTTGTGCCAGGAAGGGAATTTTGAGCTGCTATCAACAGTTTTAAGTGATTTGACAAGTAAAGGAAAAATTTGCAATGAGGGTATATGGGATGTTGTGCTTTCAATGGTTTGCAAACCAGAGAAGGTACCTGAATCTTTTGAGCTTTTGGACGCCTTGGTGTTGGCATGA 1377 0.5221 MATPKPISPFRLSSLLRSQKDPSVAFQLFLNPNPQTNHRPFRHSLLSYDLIITKLGRAKMLPEMEQVLHQLHLDTRHRVPEPLLCHVITFYARARQPSRAVQTFLSIPSFRCQRTLKSFNTLLHALLTCRQFDAVTELAARAGEFGAPDACTYNILIRASCLRGHADRAFELFDEMRSRGVRPDQATFGTLIHRLCENSRLREAFELKEEMFREFKLEGCVTIYTNLIKGVCKIGELSWAFRIKDEMVKKGLKLDAALYNTLINALFKAGKKEEALRVLEEMREGGCEWNSVTCNVMIGEYCRENNFEEAYRILDGVEGVKPDVIGYNVFLGWLCKEGKWSEAMDLFHDMPRRGCAPDVVTYRTLFDGLCRWRQFREAVVVLDEMMFKGYAPLSKNLNAFVSELCQEGNFELLSTVLSDLTSKGKICNEGIWDVVLSMVCKPEKVPESFELLDALVLA* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4888 458 Gene3D Tetratricopeptide repeat domain 205 317 IPR011990 GO:0005515
Lja3g4888 458 Gene3D Tetratricopeptide repeat domain 318 451 IPR011990 GO:0005515
Lja3g4888 458 PANTHER OS05G0207200 PROTEIN 1 456 - -
Lja3g4888 458 Pfam PPR repeat family 148 196 IPR002885 -
Lja3g4888 458 Pfam PPR repeat family 322 371 IPR002885 -
Lja3g4888 458 Gene3D Tetratricopeptide repeat domain 69 204 IPR011990 GO:0005515
Lja3g4888 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 392 IPR002885 -
Lja3g4888 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 214 IPR002885 -
Lja3g4888 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Lja3g4888 458 Pfam Pentatricopeptide repeat domain 242 301 IPR002885 -
Lja3g4888 458 TIGRFAM PPR: pentatricopeptide repeat domain 327 359 IPR002885 -
Lja3g4888 458 TIGRFAM PPR: pentatricopeptide repeat domain 292 315 IPR002885 -
Lja3g4888 458 TIGRFAM PPR: pentatricopeptide repeat domain 151 184 IPR002885 -
Lja3g4888 458 TIGRFAM PPR: pentatricopeptide repeat domain 360 392 IPR002885 -
Lja3g4888 458 TIGRFAM PPR: pentatricopeptide repeat domain 223 256 IPR002885 -
Lja3g4888 458 TIGRFAM PPR: pentatricopeptide repeat domain 187 214 IPR002885 -
Lja3g4888 458 TIGRFAM PPR: pentatricopeptide repeat domain 258 290 IPR002885 -
Lja3g4888 458 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 1 456 - -
Lja3g4888 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Lja3g4888 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 255 289 IPR002885 -
Lja3g4888 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 220 254 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4888 Lja-Chr3 90928398 90930113 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4888 7 458 Glycosyltransferase AT1G05670 21.610 1.97e-21 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4888 - - gmx:100781017 589.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4888 3 90928398 90930113 Lja3g4888 3 90928398 90930113 ECH