Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4864 ATGTTAATTTATACTGGGACATATGATGAGAGGAGATTGTTTGGTGTTACCACCCTTGATGTTGTAAGGGCAAAAACTTTCTATGCTGGAAAGGCCAAAGTTCCAGTTGCCGAGGTCAATGTACCTGTTGTCGGTGGCCATGCAGGCATTACCATTCTGCCACTATTTTCTCAAGCAACACCACAAGCCAATCTGGATCATGACCTAATTCAGGCTCTTACAAAGAGGACACAAGATGGAGGAACAGAAGTTGTGGAAGCTAAGGCTGGCAAGGGTTCTGCAACATTGTCAATGGCTTATGCTGGAGCAATTTTCGCTGATGCTTGCCTCAAGGGCCTTAACGGAGTCCCAGACGTTGTTGAGTGCTCATATGTGCAATCCAGTGTCACTGATCTTCCTTTCTTTGCTTCCTAG 414 0.4565 MLIYTGTYDERRLFGVTTLDVVRAKTFYAGKAKVPVAEVNVPVVGGHAGITILPLFSQATPQANLDHDLIQALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSYVQSSVTDLPFFAS* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4864 137 SUPERFAMILY LDH C-terminal domain-like 16 135 IPR015955 GO:0003824|GO:0016616
Lja3g4864 137 Gene3D - 17 137 IPR015955 GO:0003824|GO:0016616
Lja3g4864 137 PANTHER MALATE DEHYDROGENASE 1, MITOCHONDRIAL-RELATED 5 137 - -
Lja3g4864 137 PANTHER MALATE AND LACTATE DEHYDROGENASE 5 137 - -
Lja3g4864 137 ProSitePatterns Malate dehydrogenase active site signature. 16 28 IPR001252 GO:0006108|GO:0016615
Lja3g4864 137 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 17 136 IPR022383 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4864 Lja-Chr3 90745160 90746323 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4864 K00026 - dcr:108223687 234.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4864 3 90745160 90746323 Lja3g4864 3 90745160 90746323 ECH