Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4846 ATGGCTGACACTTCCCTCCAAAATCAAGGTAGCATGTCATTGAGCTCGGTTGGCGTGGCAGCGTCAAAGGAGAAGGTAGATTCTGTTGTGAAGAGAGGTCGCCAGGCCAAGAATCGCCGCAATAACAACAGAGCCCGCAAATCATTGATAAAAACTCGCACCAAAAAGGCTTTGGAAGCTTTGGAATCGCTTAAGAATAAAAAAGATGCACAACCAGAAGAAATCCTTCCAATTGAGAAACTAATTAGAGAGGCTTACTCGGTAATCGATAAGGCAGTGAGAGTGGGCACAATGCACAGGAACACGGGAGAACGTCGAAAGTCTAGGCTTGCCAGAAGTAAGAAGCTTGTGGAGATCCACCATGGCTGGTATACCCCAGGTTCTGAAGGCAGTGTCTGA 399 0.4712 MADTSLQNQGSMSLSSVGVAASKEKVDSVVKRGRQAKNRRNNNRARKSLIKTRTKKALEALESLKNKKDAQPEEILPIEKLIREAYSVIDKAVRVGTMHRNTGERRKSRLARSKKLVEIHHGWYTPGSEGSV* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4846 132 MobiDBLite consensus disorder prediction 1 51 - -
Lja3g4846 132 PANTHER 30S RIBOSOMAL PROTEIN S20, CHLOROPLASTIC 16 129 - -
Lja3g4846 132 Gene3D Ribosomal protein S20 26 131 IPR036510 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lja3g4846 132 SUPERFAMILY Ribosomal protein S20 27 129 IPR036510 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lja3g4846 132 Pfam Ribosomal protein S20 27 113 IPR002583 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lja3g4846 132 Hamap 30S ribosomal protein S20 [rpsT]. 1 116 IPR002583 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lja3g4846 132 PANTHER 30S RIBOSOMAL PROTEIN S20 16 129 IPR002583 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lja3g4846 132 MobiDBLite consensus disorder prediction 35 51 - -
Lja3g4846 132 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4846 Lja-Chr3 90494798 90495995 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4846 K02968 - gmx:100499656 154.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4846 3 90494798 90495995 Lja3g4846 3 90494798 90495995 ECH