Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4834 ATGGCAACAGCGACGGTGAAGAGAATCGGAGTGGTTGGCGGAGGCCAAATGGGTTCCGGAATAGCCCAAGTCGCCGCCATGCACGGCGTCGACGTTTGCCTCTTCGATGTCGACCCTCAAGCTCTTTCCAAAGCTTCCTCTTCCATCTCTAACTCCATCAACCGTCTCGTTTCCAAATCACACCTCTCTCAGGTGGCAGGTGCTGATGCTTTGAAACGGCTGCGTTTTACCTCGGATTTGGAAGAGTTTCGTGATGCTGATTTTGTCATTGAAGCTATTGTGGAATCTGAAGATGTGAAGAAAACCTTGTTTGTTCAACTGGACAAGATTGTTAAGAGTTCTGCGATTCTGGCATCGAACACGAGTTCAATCTCCATTACTCGCCTAGCATCTTCTACATGCAGGCCAAGCCAGGTGATAGGGATGCATTTTATGAATCCTCCGCCTTTGATGAAGCTGATTGAGATTGTGCGTGGTGCGGACACTTCTGATGAGACTTTTGCTGCGACGAAAGCACTGTCAGAGAGGCTCGGGAAGACAGTAATAACCTCCCAGGATTATTCAGGCTTTATAGTAAATCGGATCCTTATGCCAATGATAAATGAAGCATTTTTTACTCTCTACACTGGTGTTGCAACCAAAGAGGATATTGATACCGGGATGAAGCTGGGTACTAACCATCCAATGGGTCCTTTAGAGCTAGCTGACTTCATTGGATTGGATGTGTGCTTGTCAATAATGAAAGTTCTTCACGCTGGTCTTGGGGACAATAAATACGCACCCTGCCCTCTACTTGTGCAGTATGTTGATGCTGGCCGGCTTGGAAGAAAACGTGGCATTGGCGTCTATGACTACCTAAAATCATCTTCTCGTCTCTAA 879 0.4687 MATATVKRIGVVGGGQMGSGIAQVAAMHGVDVCLFDVDPQALSKASSSISNSINRLVSKSHLSQVAGADALKRLRFTSDLEEFRDADFVIEAIVESEDVKKTLFVQLDKIVKSSAILASNTSSISITRLASSTCRPSQVIGMHFMNPPPLMKLIEIVRGADTSDETFAATKALSERLGKTVITSQDYSGFIVNRILMPMINEAFFTLYTGVATKEDIDTGMKLGTNHPMGPLELADFIGLDVCLSIMKVLHAGLGDNKYAPCPLLVQYVDAGRLGRKRGIGVYDYLKSSSRL* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4834 292 Gene3D - 5 191 - -
Lja3g4834 292 Pfam 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 189 285 IPR006108 GO:0006631|GO:0016491|GO:0016616
Lja3g4834 292 ProSitePatterns 3-hydroxyacyl-CoA dehydrogenase signature. 186 211 IPR006180 GO:0006631|GO:0016491|GO:0016616
Lja3g4834 292 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 187 IPR036291 -
Lja3g4834 292 PANTHER 3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN 4 285 - -
Lja3g4834 292 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 189 286 IPR008927 -
Lja3g4834 292 PIRSF HCDH 1 291 IPR022694 GO:0006631|GO:0016616|GO:0070403
Lja3g4834 292 Gene3D - 192 291 IPR013328 GO:0016491
Lja3g4834 292 Pfam 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 9 186 IPR006176 GO:0006631|GO:0070403
Lja3g4834 292 PANTHER 3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN 4 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4834 Lja-Chr3 90365232 90368178 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4834 64 292 Acyl Lipid Metabolism Gene Families AT3G15290 78.603 4.08e-137 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4834 K00074 - gmx:100170753 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4834 3 90365232 90368178 Lja3g4834 3 90365232 90368178 ECH