Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4830 ATGGCAGCCGGAGTCGACGGCGGCGTGAAGGAAGCTACGGCGTCGCAGGCATACCTTGAAGGCAAGGCAGTGAACGATACGAGAGCTTTGATAGCTGAGCTCTGTCGCCATTTCTACAATCTCGGTTGGGTTTCAGGAACTGGTGGCAGCATCACCATCAAGGTCCATGATGACTCCATTCCTAAACCCCATCAGCTTGTGATCATGTCCCCTTCAGGTGTTCAGAAGGAAAGAATGGAACCAGAGGACATGTATGTGTTATCCCACACTGGAGAAGTCTTGGCTGCTCCATCTCCCAAGCCTTACCCGAATAAACCTCCCAAATGTTCTGATTGTGGTCCACTTTTCATGAAGGCATATGAAATGCGTGATGCTGGGGCTGTTATCCACAGTCATGGGATAGAATCTTGTCTTGTAACAATGCTCAATCCTTTGGCAAAGGAATTTAGAATTACACACATGGAAATGATAAAAGGAATCAAGGGACATGGTTATTATGATGAACTAGTGATCCCCATAATAGAGAACACATCCTACGAATATGAGCTCACAGAATCTCTAGCTAAAGCTATTGAGGCCTACCCTAAAACTACAGCAGTACTTGTACGCAACCATGGAATATATGTTTGGGGAGACTCATGGATCAGTGCTAAAACTCAGTCTGAGTGTTATCATTATCTCTTTGATGCTGCTATCAAACTTCACCAATTGGGATTGGACTGGTCTACTCCAAATCATGGTCCAATACATAGTCCTAGGAGTCTCAGGATTGCTGGGGATTCAAATCTGTCTGTCAAGGCAAGGAAGGTTAATGGTGAAATTGATCCATTTCCACGTTGCATTGTTCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTTACTGAGGTTCTCTTCCCATATGCACGTGATAATGTTGAGAGGCATCTATCCAAGACATTTGATACTCCCGAGACCCAAGCTGATATTAAGTTGCTTCGCTCACAGGTTGAAAGTGACCTGGAACAAGGGGTTGCAGGTGCTGTGCCTATTCCTGAAGATAATGCTGTGAAAGAAGAAGTCATTGCTGCTTTAGTAACTAATGTAGAAGCTATGATTAAAGCAGATAGAAAGATCACTGCCTTGAAAGAGTTGCAGGGCCATATATGGCACACTGGTTATGAGAATAATGAATTAAAGGGAATGGTTTTTGATGATGTACCAGAAGCCTTGGAAAAGTGGCATGCCTTGGGCATAAAGGTATACATATATTCTAGTGGTAGCAGGTTGGCGCAAAGGCTAATATTTGGACATACAAACCATGGGGACCTAAGAAAATATTTATCTGGGTTTTTTGATACCACAGTGGGGAACAAAAGAGAAACACACAGTTATGTTGAAATTTCTGCATCACTTGGCGTTGATAAGCCATCAGATATCTTATTTGTAACTGATGTTTTTCAAGAAGCTACAGCTGCTAAAGCAGCAGGTCTGGAGGTCATAATTTCTATTCGGCCTGGAAATGCACCTCTCCCTGAGAATCACGGGTTGAAGACAATCAGTTCCTTCTCTGAGATCTGA 1563 0.4319 MAAGVDGGVKEATASQAYLEGKAVNDTRALIAELCRHFYNLGWVSGTGGSITIKVHDDSIPKPHQLVIMSPSGVQKERMEPEDMYVLSHTGEVLAAPSPKPYPNKPPKCSDCGPLFMKAYEMRDAGAVIHSHGIESCLVTMLNPLAKEFRITHMEMIKGIKGHGYYDELVIPIIENTSYEYELTESLAKAIEAYPKTTAVLVRNHGIYVWGDSWISAKTQSECYHYLFDAAIKLHQLGLDWSTPNHGPIHSPRSLRIAGDSNLSVKARKVNGEIDPFPRCIVLDIEGTTTPISFVTEVLFPYARDNVERHLSKTFDTPETQADIKLLRSQVESDLEQGVAGAVPIPEDNAVKEEVIAALVTNVEAMIKADRKITALKELQGHIWHTGYENNELKGMVFDDVPEALEKWHALGIKVYIYSSGSRLAQRLIFGHTNHGDLRKYLSGFFDTTVGNKRETHSYVEISASLGVDKPSDILFVTDVFQEATAAKAAGLEVIISIRPGNAPLPENHGLKTISSFSEI* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4830 520 SMART Aldolase_II_2 29 232 IPR001303 -
Lja3g4830 520 Gene3D - 387 520 IPR023214 -
Lja3g4830 520 Pfam Class II Aldolase and Adducin N-terminal domain 30 231 IPR001303 -
Lja3g4830 520 TIGRFAM salvage_mtnB: methylthioribulose-1-phosphate dehydratase 31 237 IPR017714 GO:0005737|GO:0019509|GO:0046872
Lja3g4830 520 PANTHER METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE 2 520 IPR017714 GO:0005737|GO:0019509|GO:0046872
Lja3g4830 520 Gene3D - 292 386 - -
Lja3g4830 520 Hamap Methylthioribulose-1-phosphate dehydratase [APIP]. 16 240 IPR027514 GO:0005737|GO:0019509|GO:0046872
Lja3g4830 520 Hamap Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1. 16 520 IPR027505 -
Lja3g4830 520 SUPERFAMILY HAD-like 279 520 IPR036412 -
Lja3g4830 520 PANTHER BIFUNCTIONAL METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE/ENOLASE-PHOSPHATASE E1-RELATED 2 520 - -
Lja3g4830 520 CDD HAD_EP 280 501 IPR023943 GO:0000287|GO:0019509|GO:0043874
Lja3g4830 520 Hamap Enolase-phosphatase E1 [ENOPH1]. 279 520 IPR027511 GO:0019509
Lja3g4830 520 SFLD enolase-phosphatase 279 519 IPR023943 GO:0000287|GO:0019509|GO:0043874
Lja3g4830 520 Hamap Enolase-phosphatase E1 [mtnC]. 277 520 IPR023943 GO:0000287|GO:0019509|GO:0043874
Lja3g4830 520 Gene3D - 24 248 IPR036409 -
Lja3g4830 520 SFLD C1.5.4: Enolase-phosphatase Like 279 519 - -
Lja3g4830 520 Pfam haloacid dehalogenase-like hydrolase 279 491 - -
Lja3g4830 520 TIGRFAM enolase-ppase: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 279 516 IPR023943 GO:0000287|GO:0019509|GO:0043874
Lja3g4830 520 SUPERFAMILY AraD/HMP-PK domain-like 25 245 IPR036409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4830 Lja-Chr3 90311361 90323542 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4830 K16054 - gmx:100794485 921.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4830 3 90311361 90323542 Lja3g4830 3 90311361 90323542 ECH