Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4822 ATGAACCGATCGATCCAGCCGCCGCCGTCGTCGGAGCATCCATTCCGAAGCCCCAAATTGAGGAGAGTGTATTCGGGAAGCGGTTCTCATCACATGATGAACCCTGATGTGATCGAGATTCCTCAACCGGCGTGTAACGCTTCTTCCAATTTGATGAAGCAGAAAGAGGCTGTTTTTCATGGCGTGATTGACATCAGCAATGATGATGACTCTGCTGATTTAGTGTTAGTTGGTGAAAAAGTTGGAAAAAGTAACAAGGGGAAGACAGTTGAATCTATTCATGATGGTTTTGGTGATCATCAAAATATGGAAGTGTTTGACAGTATATTTTGTCCACCTGTTATGGGCAAATCTGGACCAGGTAGCGGGGTTGAGTCTTCCAATGGTTATACTTCAGGATCACATGATATAATCCATGTTGATGACATTTGTTCTGATCAATCATATGATGATGATGACTTCTCTGATCTTTTTTCTGATGATTATATGGACGTAGATGATTATGCTATACTACAGGCACATTTTGATAATGTGAACATACCTCCTGGAATTGAGGCACCCATTCCTTGGTTGTCACAATATGATCTAGGTAAAAATTCTGCAGCGACTTACTCATCTCAGCCTTCATGGTCATTAGAGCCTACTAACCCTGAAATCCAAGGACCTTCAGCTGGTAGTTCTAATTTGCAAGTAAAAGTAGGTTCTATTGATCTCCCTTCCGGAAAGGAGCTGTCTTCTTCTAAGTTATCTTCTCAAGCTGCATCTAGTAAGAAGAAATTAGATGCCTCACAATGCAGGAGGCGTAAGCTAAAGTTGGCATTAGAAGTGGAGTCATCTAAATCTAATTGGGTTTTGGGACATTATGGTAAAAAGAAGCCTGATGTTTTTGGTTCTTCAGCTAACCATGGATATATGAACAATTCAGAGGCCATGATGAAGCTGCCATATGGTGAGCCACAATGGGAACTATTTGAAAGTGAAAAGAAAGCTGCTGGAAGTATCAGTTCACATCATTCGAATTCTGTTGGACCTGTAGATGGATCATTGCATTTACCGGGAAATGAGTCTGCAAACCCTTGGTTGTCGAAGAGTTCTTTTCATTTTAATCCATTTTCTAATTATACAGCTAATTCAAGTTTTTTCAATCCATTTGTTCCTCTTAATGCCCCTCCTCCGGAGCTAGCGTTTCATAACACTTGGGCGGCTCACAATTACGCGAGAGGTGGAAATAATGGAACATCTGATAGTACTGTTGTGGCAATCTCTGATGAAGCCAGAGATGAAATTTTAAGGAAATTTCAAAACTTTAAACAATTTGACACCGTTGAAGACACTTCAGACCATCATTTTCTTCCCACTAATTCTTCCATGAAGCAGTATCCAAAGGATTGGGCTAAAAGAATCCAGGAAGAGTGGAAGTTATTGGAGAAGAACTTACCTGATACAATATTTGTCAGAGTTTATGAATCAAGAATAGATCTTTTGAGGGCTGTGATTATTGGAGCAGAGGGAACTCCTTATCATGATGGTCTTTTCTTTTTTGATGTTTTCTTTCCCAGTGGCTATCCCAATGTACCCCCGCAAGTCTACTACCACTCTGGTGGGCTTCGTCTCAACCCAAATTTATATAATTGTGGCAAAGTATGCCTCAGTCTACTTAACACCTGGTCTGGCAGTAAGAATGAGAAGTGGCTTCCGGGTGTTTCAACAATTTTACAAGTTCTAGTCTCTATACAAGGTCTAATCTTGAATACAAAGCCTTACTTTAATGAGCCTGGATATGCACATATGAGTGGCTCGGCTGATGGTGAATTGAGATCCCTACGGTATAATGAGGATACATTCATGCTGTCTTTGAAGACAATGATGTATATGATAAGAAGGCCTCCAAAGAATTTTGAGGACTTCGTTGTTGGGCACTTCTGCAGCCGAGCTCATGATATTTTGGTGGCATGTAAAGCATACATGGATGGTGCTCAAGTTGGCTGTTTAGTCAAAGGTGGGGTTCAGGATGTTGATCAAGGAGACAAGAGCTGCTCAAAGCAGTTTCAGTATTGCTTATCTGCACTTGTTAACATGCTTGTTAAAGAGTTTACACAAATTGGAGTTAAGGACTGTTTGAAGTTTGTGTCTTCATCAACAGCACAGGACAAGCAGTTGGGTGAAGTGCCTGTGGCTGCTATGTTTTCTTGA 2193 0.409 MNRSIQPPPSSEHPFRSPKLRRVYSGSGSHHMMNPDVIEIPQPACNASSNLMKQKEAVFHGVIDISNDDDSADLVLVGEKVGKSNKGKTVESIHDGFGDHQNMEVFDSIFCPPVMGKSGPGSGVESSNGYTSGSHDIIHVDDICSDQSYDDDDFSDLFSDDYMDVDDYAILQAHFDNVNIPPGIEAPIPWLSQYDLGKNSAATYSSQPSWSLEPTNPEIQGPSAGSSNLQVKVGSIDLPSGKELSSSKLSSQAASSKKKLDASQCRRRKLKLALEVESSKSNWVLGHYGKKKPDVFGSSANHGYMNNSEAMMKLPYGEPQWELFESEKKAAGSISSHHSNSVGPVDGSLHLPGNESANPWLSKSSFHFNPFSNYTANSSFFNPFVPLNAPPPELAFHNTWAAHNYARGGNNGTSDSTVVAISDEARDEILRKFQNFKQFDTVEDTSDHHFLPTNSSMKQYPKDWAKRIQEEWKLLEKNLPDTIFVRVYESRIDLLRAVIIGAEGTPYHDGLFFFDVFFPSGYPNVPPQVYYHSGGLRLNPNLYNCGKVCLSLLNTWSGSKNEKWLPGVSTILQVLVSIQGLILNTKPYFNEPGYAHMSGSADGELRSLRYNEDTFMLSLKTMMYMIRRPPKNFEDFVVGHFCSRAHDILVACKAYMDGAQVGCLVKGGVQDVDQGDKSCSKQFQYCLSALVNMLVKEFTQIGVKDCLKFVSSSTAQDKQLGEVPVAAMFS* 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4822 730 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 39-RELATED 47 714 - -
Lja3g4822 730 Pfam Ubiquitin-conjugating enzyme 467 588 IPR000608 -
Lja3g4822 730 MobiDBLite consensus disorder prediction 242 262 - -
Lja3g4822 730 CDD UBCc 466 592 IPR000608 -
Lja3g4822 730 SUPERFAMILY UBC-like 448 630 IPR016135 -
Lja3g4822 730 MobiDBLite consensus disorder prediction 205 228 - -
Lja3g4822 730 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 463 623 IPR000608 -
Lja3g4822 730 MobiDBLite consensus disorder prediction 242 259 - -
Lja3g4822 730 Gene3D Ubiquitin Conjugating Enzyme 422 705 IPR016135 -
Lja3g4822 730 SMART ubc_7 466 623 - -
Lja3g4822 730 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 47 714 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4822 Lja-Chr3 90258418 90265618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4822 409 708 Miscellaneous Gene Families AT2G33770 50.993 1.40e-90 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4822 K10581 - ccaj:109805727 773.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4822 3 90258418 90265618 Lja3g4822 3 90258418 90265618 ECH