Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4811 ATGGCGTCGACACCGTTTTCTGCGATCCTCCGCCACAAGTTCCAGAACCTCACCGCAAACTTTCAGCTTCTGAGACTATACCGCTCCGCCTCCACCACCGTCACGAAGCGGAGAGACCTCTACTCCAGAATCAGCCCTCTCGGAGACCCTTCTGTCAGCGTTGTTCCCGTTCTCGAAAAATGGGTCCAACAGGGTAACGCTATCAAGGAGAAGCAGCTCCAGCTCATCGTCAAAACTCTCCGCACCCGGAAACGCTTCACTCATGCACTTCAGGTTTCTGAGTGGATGAGTAGCAAAGGGCTCTGCCCAATTTCGCCGGGTGACCGAGCCGTGCAGCTAGGTCTTATCGGTAGAGTTCATGGACTGGAGAGTGCAGAGAGCTATTTTCAGAATTTGAGTGATATTGACAAAACTGAAAAAGTCCATGGTGCCCTTTTGAATTGTTACGTGAGAGCAGGATTAGTTGACAAGTCACTCTCCCAGATGCAGAAGATGAAGGAAATGGGTTATGTTTCTTGTCTCAATTACAACAATATAATGTGCCTCTACGCACAAAGTGACCAACATGAGAAAGTACCTGGGGTTTTAGCAATGATGAAAGAGGACGGTGTTTCTCCTGACATTTTCAGCTACAGGGTTTGCATAAACTCTTATGGCGCCAGATCTGACCTCGAGAATATGGAGAAACTGTTGGAGGAAATTGAAAGAGAAGGCCACACATGCGTGGATTGGATGACATATTCTACAGTGGCCACCTTCTACATCAGAGCAGGCCTGAAGGAGAAAGCTCTGGCCTGCCTGAAGAAGTGTGAGGACAATTTAGACAAACGCAGCGCGGTTGCTTACAACCATCTAATTTCACATTATGCAGGTCTTGAGATGAAGAAAGCCATGATGAGATTGTGGAAACTTCAGAAGGCTAACTGTAAGAGGCAACTTAATGGGGAATATATAACCCTGTTGAGTTGGCTGGTGAAGTTAGGGGACCTTGATGAAGCTGAGAAATTACTTGGTGAGTGGGAGTTATCTGGTAACACTTACGATTTCAGGGTGCCAAACATCCTCCTGATCGGATATTCAAAGAAGGGATTGATTGAAAAGGCGGAAACAATGCTCCGAAGCATGGTTGAGAAAGGGAAGACTCCTAATCCTTACAGTTGGTCTATCGTTGCATCTGGGTATGTGGCCAAGGAGAACATGGAGAAGGCATTTCAGTGCCTCAAGGAAGCTTTGGCTGTGCTAGCTGAGAATAAAGGTTGGAGACCAAAACCTAATGTTGTTTCCAGCATATTGAGTTGGGTTACTGATAACAGAGATATAGAGGAAGTAGAAGATTTTGTAAATTCATTGAAGAAAGTGATGTCAATGAATAGGGACATGTATCGGTCCTTGATCAAGCTACATGTTAGATGTGGGAAAGAAGTAGATGGGGTTTTAGAGAGCATGAAAGCTGACAATATTGAGCTCGATGAAGAGTTGGAGGAAATTCTTAAGTCGAGATTGCAATAA 1509 0.4546 MASTPFSAILRHKFQNLTANFQLLRLYRSASTTVTKRRDLYSRISPLGDPSVSVVPVLEKWVQQGNAIKEKQLQLIVKTLRTRKRFTHALQVSEWMSSKGLCPISPGDRAVQLGLIGRVHGLESAESYFQNLSDIDKTEKVHGALLNCYVRAGLVDKSLSQMQKMKEMGYVSCLNYNNIMCLYAQSDQHEKVPGVLAMMKEDGVSPDIFSYRVCINSYGARSDLENMEKLLEEIEREGHTCVDWMTYSTVATFYIRAGLKEKALACLKKCEDNLDKRSAVAYNHLISHYAGLEMKKAMMRLWKLQKANCKRQLNGEYITLLSWLVKLGDLDEAEKLLGEWELSGNTYDFRVPNILLIGYSKKGLIEKAETMLRSMVEKGKTPNPYSWSIVASGYVAKENMEKAFQCLKEALAVLAENKGWRPKPNVVSSILSWVTDNRDIEEVEDFVNSLKKVMSMNRDMYRSLIKLHVRCGKEVDGVLESMKADNIELDEELEEILKSRLQ* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4811 502 PANTHER OS12G0527900 PROTEIN 22 500 - -
Lja3g4811 502 Gene3D Tetratricopeptide repeat domain 68 254 IPR011990 GO:0005515
Lja3g4811 502 TIGRFAM PPR: pentatricopeptide repeat domain 176 208 IPR002885 -
Lja3g4811 502 TIGRFAM PPR: pentatricopeptide repeat domain 353 383 IPR002885 -
Lja3g4811 502 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 348 382 IPR002885 -
Lja3g4811 502 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 22 500 - -
Lja3g4811 502 Gene3D Tetratricopeptide repeat domain 275 438 IPR011990 GO:0005515
Lja3g4811 502 SUPERFAMILY HCP-like 221 411 - -
Lja3g4811 502 Pfam PPR repeat 144 169 IPR002885 -
Lja3g4811 502 Pfam PPR repeat 385 409 IPR002885 -
Lja3g4811 502 Pfam PPR repeat 317 344 IPR002885 -
Lja3g4811 502 Pfam PPR repeat 353 379 IPR002885 -
Lja3g4811 502 Coils Coil 397 417 - -
Lja3g4811 502 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 138 172 IPR002885 -
Lja3g4811 502 Coils Coil 217 237 - -
Lja3g4811 502 Coils Coil 479 499 - -
Lja3g4811 502 Pfam Pentatricopeptide repeat domain 171 221 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4811 Lja-Chr3 90170345 90173355 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4811 40 502 EF-hand Containing Proteins AT1G02150 32.473 5.27e-78 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4811 - - lja:Lj0g3v0287449.2 813.913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4811 3 90170345 90173355 Lja3g4811 3 90170345 90173355 ECH