Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4802 ATGTTCCATCATTTCCTCCTACACTCCTTCACACTCTTCTCCACCCTTCTCCTCATAATATCACATTCACACATTGTTTCAGAAACAACGCAACTCTCACCACCAGCAACCAAAATAAACATCACCAACCACAACCTCCGAAGCTTCAACAACGCTGCAAGAGGCACAAAAATCACAGGTATTTCACAGTTCAAAAGATACCTATCTCGCTTTGGGTACCTTCCAAGAAACCATCACAACAATTTTACAGATGAGTTTGATGCAGCGTTTGAATCAGCTCTCATCAGATACCAGCAAAAGCTTGGACTCCAAGTTACCGGGAAGCTCGATTCAAAAACCGTTTCGCAGATGATCACACCACGATGCGGTGTTCAAGACACAACAACAACAAGAACAACACACACTTCACATTCTCACCTCAACAACATCACGCAGCACTTCGTGTATTTCCCAGGGAAACCACGCTGGTCACGTGACAGGCCAATGAGACTCACCTACGCCTTCTCACGTGAGTACACGATACACACCTTGACCCACCACGAAATAAGGCGCGTGTTCAAACGCGCCTTTTCGAGGTGGGCTTTGGTTATACCGGTTAGTTTCGCGGAATCCGCGGACTATGATTTCGCGGATATCAGAATAGGCTTTTACTCCGGTGACCACGGTGATGGTGAGCCGTTCGACGGGGTGCTCGGCGTGCTGGCACACTCATTCTCCCCGGAAATCGGACGGCTCCACCTCGACGCGGCCGAGACATGGGCGGTGGATTTTGCCGCGATGAAGTCGCTGGTGGCGGTGGATTTGGAGTCAGTGGCGACGCATGAGATTGGGCATTTGCTGGGATTGTCACACAGTTCGGTGAAAGAGGCTGTCATGTATCCAAGCCTGAGGCCGAGAGATAAGAGAGCTGATTTGAACATTGATGATGTAAAAGGAGTGCAATCACTTTATGGGTTGAATCGTAATTTCAGATCTCAGTGGGCACTGGAATCTGTTATGTCCGTTAATCATGGTGTGAAGTTTGGTGGGAAAGCTTTCATGTTGGTTACAGCTTTGATTATTGTTACAAGTTCTATCATTCTTAGATTTCAGTGTTAA 1098 0.4754 MFHHFLLHSFTLFSTLLLIISHSHIVSETTQLSPPATKINITNHNLRSFNNAARGTKITGISQFKRYLSRFGYLPRNHHNNFTDEFDAAFESALIRYQQKLGLQVTGKLDSKTVSQMITPRCGVQDTTTTRTTHTSHSHLNNITQHFVYFPGKPRWSRDRPMRLTYAFSREYTIHTLTHHEIRRVFKRAFSRWALVIPVSFAESADYDFADIRIGFYSGDHGDGEPFDGVLGVLAHSFSPEIGRLHLDAAETWAVDFAAMKSLVAVDLESVATHEIGHLLGLSHSSVKEAVMYPSLRPRDKRADLNIDDVKGVQSLYGLNRNFRSQWALESVMSVNHGVKFGGKAFMLVTALIIVTSSIILRFQC* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4802 365 SUPERFAMILY PGBD-like 54 127 IPR036365 -
Lja3g4802 365 CDD ZnMc_MMP 155 318 IPR033739 GO:0008237|GO:0008270
Lja3g4802 365 Pfam Matrixin 156 318 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Lja3g4802 365 PANTHER METALLOENDOPROTEINASE 4-MMP 33 354 - -
Lja3g4802 365 Gene3D Collagenase (Catalytic Domain) 49 323 IPR024079 GO:0008237
Lja3g4802 365 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 148 320 - -
Lja3g4802 365 PANTHER MATRIX METALLOPROTEINASE 33 354 - -
Lja3g4802 365 SMART col_5 152 319 IPR006026 GO:0006508|GO:0008237|GO:0008270
Lja3g4802 365 Pfam Putative peptidoglycan binding domain 61 117 IPR002477 -
Lja3g4802 365 PRINTS Matrixin signature 117 130 IPR021190 GO:0004222|GO:0006508|GO:0008270
Lja3g4802 365 PRINTS Matrixin signature 305 318 IPR021190 GO:0004222|GO:0006508|GO:0008270
Lja3g4802 365 PRINTS Matrixin signature 210 238 IPR021190 GO:0004222|GO:0006508|GO:0008270
Lja3g4802 365 PRINTS Matrixin signature 186 201 IPR021190 GO:0004222|GO:0006508|GO:0008270
Lja3g4802 365 PRINTS Matrixin signature 271 296 IPR021190 GO:0004222|GO:0006508|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4802 Lja-Chr3 90093394 90094836 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4802 - K07999 gmx:100781237 468.388