Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4800 ATGGGGAAAATCCCTCCTGCATTTCGTCCTGCACTCTCAAACCCAAACTTGATAAACCCATCTTCCATGCTTCCCTCTCCTTCCAATTCCAATTCCAAACCCCGTGACTTTCCCAAGAAAAACGCACCACATTTTCCCGGAAAATCCCGAAAACCCCAACAGGAGCCTCCACAATCCAAACCAACTCTATTCAAATCCCCAAGTCTCCAAGATGCCAAAACCCTCTTCAATTCCATCATCAACAACACCTCAAATGCTGCAGACATCAAATTCCACAATTCAATCCTTCAATCCTATACCTCAATCTCCACCACCATCAACGATTCCATCGCTTTTTTCCGCCACATGGTTAAGACCCACCCTTCCTTCGCCCCGGATCGATCCACCTACAATATCTTGCTCGCTCACTCCTGCAAATCCCCATGTTCCACACTTTCCCCAATTCACCAAACCCTAAATTTGATGGTTGCCGATGGCGTCACCCCGGATAAAGTCACCACCGATATAGCCATCCGGGCGCTCTGCTCGGCTGGCCGGATAGACCACGCGGTGGACTTGATCAAGGAACTGTCTCAGAAGCATTGCACCCCTGACACTTACACTTTCAATTTCATTGTTAAGCACCTATGTAAGTGCCGTGTGTTGAGCTCTGTCAATAGTTTCATTGATGAAATGCGTAAGAATTTCGGTATCAAGCCTGATCTTGTTACTTATACAATTCTGATTGATAATGTGTGTAACACTAAGAACTTGCGTGAGGCTTCGAGGCTGGTGACCGTGCTGCATAAAGAGGGTTTTAAGCCTGATTGCTTTCTTTACAATACAATCATGAAGGGGTATTGTATGCTGAGTAGGGGGAGTGAGGCGATTGAGGTTTATAATACAATGAAAGAGGAAGGGGTGGAACCTGACCTTGTCACTTATAACACTTTGATTTTCGGGTTGTCGAAATCTGGCCGGGTTCAGGAAGCAAAGAAGTTATTGCGTGTTATGGTGGAAAAGGGTTATTCCCCTGATGAGATAACGTATACTTCCCTGATGAATGGAATGTGCAGGAAAGGGGATGCCATGGGTGCACTAGCATTGTTGAAAGAGATGGACGAGAAGGGCTGCAGTCCGAATTCATGCACATATAACACGCTGCTACACGGGTTGTGTAAGGCTAGGTTGTTGGAGAAGGCCATGAAATTATATACAGGGATGAAATCAGATGGTCTGAAGCTTGAAACAGCATCTTATGCTACACTTGTCAGGGCACTGTGTAGAGAGAGCAGAATCGCGGATGCTTATGAAGTGTTTGATTATGCAGTTGAGACCAAGAGCTTGACAGATGTGTCTGCTTACACAACATTGGAGAGCACACTTAAATGGGTCAACAAAGCAAAAGAACAAGGCCTTGCAATTTAA 1407 0.4549 MGKIPPAFRPALSNPNLINPSSMLPSPSNSNSKPRDFPKKNAPHFPGKSRKPQQEPPQSKPTLFKSPSLQDAKTLFNSIINNTSNAADIKFHNSILQSYTSISTTINDSIAFFRHMVKTHPSFAPDRSTYNILLAHSCKSPCSTLSPIHQTLNLMVADGVTPDKVTTDIAIRALCSAGRIDHAVDLIKELSQKHCTPDTYTFNFIVKHLCKCRVLSSVNSFIDEMRKNFGIKPDLVTYTILIDNVCNTKNLREASRLVTVLHKEGFKPDCFLYNTIMKGYCMLSRGSEAIEVYNTMKEEGVEPDLVTYNTLIFGLSKSGRVQEAKKLLRVMVEKGYSPDEITYTSLMNGMCRKGDAMGALALLKEMDEKGCSPNSCTYNTLLHGLCKARLLEKAMKLYTGMKSDGLKLETASYATLVRALCRESRIADAYEVFDYAVETKSLTDVSAYTTLESTLKWVNKAKEQGLAI* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4800 468 MobiDBLite consensus disorder prediction 1 67 - -
Lja3g4800 468 MobiDBLite consensus disorder prediction 14 36 - -
Lja3g4800 468 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Lja3g4800 468 Pfam PPR repeat family 201 247 IPR002885 -
Lja3g4800 468 Gene3D Tetratricopeptide repeat domain 225 357 IPR011990 GO:0005515
Lja3g4800 468 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 1 467 - -
Lja3g4800 468 TIGRFAM PPR: pentatricopeptide repeat domain 412 436 IPR002885 -
Lja3g4800 468 TIGRFAM PPR: pentatricopeptide repeat domain 168 199 IPR002885 -
Lja3g4800 468 TIGRFAM PPR: pentatricopeptide repeat domain 272 304 IPR002885 -
Lja3g4800 468 TIGRFAM PPR: pentatricopeptide repeat domain 236 270 IPR002885 -
Lja3g4800 468 TIGRFAM PPR: pentatricopeptide repeat domain 306 340 IPR002885 -
Lja3g4800 468 TIGRFAM PPR: pentatricopeptide repeat domain 341 375 IPR002885 -
Lja3g4800 468 TIGRFAM PPR: pentatricopeptide repeat domain 376 407 IPR002885 -
Lja3g4800 468 MobiDBLite consensus disorder prediction 52 67 - -
Lja3g4800 468 Gene3D Tetratricopeptide repeat domain 368 464 IPR011990 GO:0005515
Lja3g4800 468 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 408 IPR002885 -
Lja3g4800 468 Gene3D Tetratricopeptide repeat domain 62 224 IPR011990 GO:0005515
Lja3g4800 468 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Lja3g4800 468 Pfam PPR repeat 170 194 IPR002885 -
Lja3g4800 468 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 467 - -
Lja3g4800 468 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 373 IPR002885 -
Lja3g4800 468 Pfam Pentacotripeptide-repeat region of PRORP 288 440 IPR033443 -
Lja3g4800 468 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Lja3g4800 468 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 163 197 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4800 211 465 Glycosyltransferase AT1G05670 30.303 2.14e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4800 - - adu:107458955 690.263