Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4796 ATGCACCAATCACCTCGAATTCAAAGAAACGATTGCTATCACAACAACATAAACATTCACAACGCGATCACTTTCCAAATACCCAAATCTTCTTCTTCACTCTCAATCTCTCTCGCGCATTCGTTTCTGCTCTTCGCTCTCGCTCTCGTGTGCCCTCGATTTCCCATCGTGTTCCCTGTGGTGATGATTCTGCACTCCTCGTCGTCGCTCACCATGGCCGATTTCACCTCCACTGCTTCCGACCAGATTCGGTTCCTGCTCAACTCCTTGAACGAAGTCAACTCTGACTCCGTTTTCCATCAACTCTCTCAGTTCACTGAGTTTGGAACTGTTGGATGCATTTTGCTGCTTCGGACTTGCTTGGATCACTTTAATTATGTCAGAAGAGATATGAATGACATGCAAAATGAGCCAATTCTGGGGGCAGTCATTAAGCACCTCTTGGACAAACCAAACTTCAGCACAGTGTTGTCTGAGTCAGTGAAGAATGTAGAAATTAATGAAAGCTTTCTCCAAAGTTTTTGTAACGGATTGCAGTTGTCCTTATTGGAAAAAATTGCCATCAGCCTCGCTTTGTCGGATTCCGAAAATCCCGATGCCAGGTTATGTGGAAAGAATTTTTGCATGGCTCAGATTGAGGAATTGGGTGCCAGCCCTGGTTCTTTTAGTTGCCATGAACAAATTCACAATATTATCATGTTCCTCAAGCAGTCTGAGGGTCTTTCCAAGCATGCGGACTCCTTCATGCAGATATTGTCACTGGTGCAGTTCAAGGACACACCACCTTATGTTTTGACTCCAGTGCTACCAGATGAGATGCATGAGGCTGATTTTTTAAGGAATATGGAGTTGTTCCATGAGTCTGGAGAAAATGATTTCGATGCTATTTTGGCTGACATACAGAAGGAAATGAACATGGGAGATATTGTGAAGGAACTAGGCTATGGCTGCACGGTTGATGTCTTACAATGTAAGGAGATATTGTCGCTCTTCTTACCTATAACTGATAAAACGCTCTCGAAATTACTTGGTGCTATTGTTCGTACCCATGCTGGGCTGGAGGACAACCAGAGCACATTCTTAACTTTTGGCACGGCCCTTGGATACAACAACTTGGCTGAGTTGCCGCCACTGAGCTCTTGGAATATTGATGTCTTGATAGATACAGTCAAACTCCTTGCACCTCAGACAAATTGGGTACGGGTCATTGAAAATCTAGATCATGAAGGATTTTTCCTTCCTAGCGAAGAAGCTTTTTCTTTTCTCATGGCTGTATATAAACATGCCTATAAGGAGCCATTTCCTCTCCATGCAATCTGTGGGTTTGTCTGGAAGAATACAGAGGGTCAGCTGTCTTTCCTCAAATATGCCGCATCAGCACCGCCAGAATTGTTTACCTTTGCACACTCTGCAAGACAGCTGGCATATGTTGATGCGATTAATGGACACAAGCTTCAAAGTGGACATGCAAATCATGCCTGGCTGTGTCTTGACCTTTTGGATGTTCTCTGCCAGCTAGCTGAGAAGGGTCATGCCAGCATTGTTCGATCTATCCTTGATTATCCCCTTAAACACTGTCCAGACGTCTTGCTTCTTGGGATGGCACACATTAATACTACTTACAATCTCTTCCAGCGTGAAGTATCTCTGGCTGTTTTTCCCATGATAGTAAATAGTGCTGTAGGCAGTGGAATGATTCTACACCTTTGGCATGTTAATCCCAATCTGGTCTTGCGAGGGCTTATGGATTCTCAAAACAGTGATGTAGACAGCATTACTAAAATTGTGGACATTTGCCAAGAGCTAAAGATTCTATCGTCAGTGCTGGAAATTATTCCCTCTTATTATAGTATAAGATTAGCAGCTGTAGCTTCAAGAAAAGAATTTCTTGATCTTGGGAAGTGGTTGAGTAGCATCTTGACTACGTACAAGGATGTCTTCTTTGAGGAGTGCCTCAAGTTCTTAAAGGAAGTCCATTTTTCAGGATCACAGAACCTCTCTGGCAATTCTTTTCATCAGCCTGGTGCTGTTCTGAATCTCTATACTGAGACAGCTGCTACCCTCTTGAAGGTTCTTAAATCTCATACTGACTTGGTTACATCTGGACTACTTAAAGAGGAGCTTGAGAGTTTGCACATATCTATTATAGATTCAAATCCAAGGCTCCAAAATGGTGGGACTACTGATTCCTCTGCTTCTGATGGATACGCGGAGGACATTGAAGCAGAAGCAAACTCCTACTTCCATCAAATGTTTTCTGAACAGTTACACATTAATGCAATGGTGCAAATGCTTGCCCGATTCAAGGAATCTTCTGTGAAGAGGGAAAAATCAATATTTGAGTGCATGATTCAAAACTTGTTCGAGGAGTATCGGTTTTTCCCCAAGTATCCTGAAAGGCAACTCAAAATTGCTGCAGTCCTATTTGGTTCTGTGATCAAGCATCAGCTTGTAACTCATCTCTCTCTGGGGATTGCGCTTCGTTATGTTCTTGATGCATTGCGCAAGCCTGCAGATTCAAAAATGTTCTTGTTTGGAAGTCTGGCACTGGAGCAGTTTGTGGGTCGTCTTGTTGAGTGGCCTCAGTATTGCAATCACATTCTGCAAATTTCCCATTTGCGCAGTACGCATTCGGAAATAGTTGCTTTAATTGAACAGGCTCTTGCCAGGATTTCCTCTGGCCATATAGATGGAGATGGGGCGAGCCATGCTTCCATAATTGGTAACCATAATTCTGCACAGGCTACATTTGGTCATGTGGAGCTCACTGGCTCTAGCGTGATACAACCTGGACAGCCACATTTGTCTATGCAACTTCAACAGAGACATGAAAATTCCTTTGATGATCGTCACAAAGCCTCCATTGGTTCATCTTCTGATGTAAAACCACTCTTATCTACTCTAGGTCAATCTTCAGTAGTTACACCCGCTGATGCTTCTAGTACTAATAAGTTACATAGCATAGTCAGCACCTCGTCAATGCTATCTTCTTCTCCTGGATTTGTTCGTCCTTCCCGGGGAGCTACTTCTGCCAAGTTTGGATCTGTCTTGAACATTGAAACTTTGGTCGCCGCTGCTGAGAAAAGAGAAACTCCTATTGAGGGTCCAGGATCGGAAGTTCAGGACAAGATATCATTTATAATTAATAATATATCATCTACCAATGTTGAAGCTAAAGCCAAAGAGTTCGATGAAATTTTGAAAGAGCAGTACTATCCATGGTTTGCACAGTATATGGTTATGAAAAGAGTGAGCATTGAGCCAAATTTTCATGATGTGTACCTGAAATTCCTTGATAAAGTTAATTCAAAGGCTTTGAACAAAGAGATTGTGCAGGCAACTTATGAAAATTGCAAGGTTCTTTTAGGATCAGAACTCATAAAGTCAAGTTCAGAAGAGCGCTCTCTGCTGAAAAATCTGGGGAGCTGGCTTGGAAAGTTGACAATTGGTCGAAATCAGGTTTTGAGGGCTCGTGAAATTGACCCAAAATCTTTGATTATAGAGGCATATGAGAAGGGGCTGATGATTGCTGTTATTCCATTTACTTCAAAGATCCTCGAACCATGCCAGAGCAGTCTTGCATATCAGCCCCCTAATCCTTGGACCATGGGCATTTTGGGATTGCTTGTTGAGATTTATTCAATGCCAAACCTAAAAATGAACCTCAAGTTTGACATAGAGGTATTGTTCAAAACTCTTGCCGTAGAGATGAAGGATGTCACACCAACTTCTCTCCTGAAGGATCGCAAAAGAGAAATTGAAGGGAATCCTGATTTTTCTAATAAAGATGTTGGGGTGTCTCAAGCACAACTGGTTTCTGATATAAAACCTGGCCTTGTACCGCCTGTAAATCAAGTGGAGTTACCACCGCTTGAAGTCACAAATCCATCCAATCCACATATGTTGTCTCCGTATGCTGGTCCTCTACATATAACCACGGGACCATTGATTGATGATGAGAAAGTAACACCTCTGGGCCTCTCTGATCAACTTCCAACCGCTCAAGGACTGTTACAAGCCACTACTAACCCATCACCTTTTAGCCAGCTCTCAACACAGATCCCTAACATAGGGACTCATGTTATTATCAATCCAAAGCTCAGTGGTTTTGGATTGCAAATGCATTTTCAGAGAGCGGTACCTATTTCAATGGATAGAGCTATCAAAGAGATAGTCACTGGTATTGTGCAGCGCAGTGTTTCCATAGCAACACAAACAACTAAGGAGCTTGTTTTGAAGGATTATGCTATGGAATCAGATGAAACACGTATATTAAATGCTGCACATTTGATGGTTGCTAGTCTGTCCGGAAGTTTGGCTCATGTCACATGCAAAGAACCTTTACGAACATCAATATCAAACCAACTGAGGACGGCACTTCAGAATATAAATATTGCAAGTGAAATCTTGGAACAAGCTGTCCAACTTGTCACCAATGATAATCTTGATCTTGGTTGTGCTGTCATTGAACAGGCTGCTACCGATAAGGCAATAAGCACCATAGATACAGAGATTGGTCAACAACTTTCTGTGAGAAGGAAGCATCGAGAAGGTATGGGCTCTACATTTTTTGACGCGAACATGTATCAACAAGGTTCAATGGGTGGTGTTCCAGAGCCCCTTCGACCCAAACCTGGTCAGCTGTCCCTCTCACAACAGCGCGTTTATGAGGACTTTGTTCGGCTTCCGTGGCAAAACCAGTCTACCCAGAACTCACATTCTATATCTGGTGGTGTTTCTATTCAATCTGGAGGTACTGGTCTCACTGGTACCAGTGGTACTGTATCCGGACAAATGAGCCCTGGCTACTCTGTGAACACAGGATATGAAGGGGTCCCTCGACCAATAGATGATATTTCAGAATCTAATTTGGCTCCGCATTTTAGTGCTTCCTCTGTTCACATCAGAGCCGCTGACAGTGTTTCCCAGCATAGTCTGGAGAAAGACTCTGTTGCCTCATTTCCTTCAACTGCTTCCACCCCTGAATTACATACAGTGGATTCTTCTGATGCTGTTAAAGATTCTGGAGCTTCTTCACAGCCACCGGTTTCATCAGGTGCCATGGAGCGCCTCGGAAGTAGCTTCTTGGAGCCTACTCTCACTACACGCGATGCTTTGGATAAGTACCAACTTGTAGCACAAAAGTTGGAAGCTGTCGTCAACAATGATTCCCGGGAAGCAGATATACAGGGCATCATTTCTGAGGTTCCTGAGATCATACTCAGATGTGTTAGTCGAGATGAGGCTGCTTTAGCTGTTGCTCAAAAGGTTTTCAAGGGTTTATATGACAATGCAACTAACAACATTCATGTCTTTGCTCATCTTGCTATCCTAACTGCCATTCGTGATGTTTGCAAGCTTGCTGTCAAGGAACTTACTAGTTGGGTAATTTATTCAGAAGAAGAAAGGAAATATAACAAAGATATTACTGTTGGCCTCATCCGCAGTGAATTGCTAAATCTGACTGAGTACAATGTTCATATGGCAAAACTTATTGATGGGGGAAGGAACAAGGCTGCTACTGAGTTTTCTATCTCTCTTCTGCAAATCCTGGTTATTGAGGAACCTAAAGTTATTTCAGAACTTCAGAGTCTCGTTGATGCTTTGGCAAAGCTTGCCACCAAGCCTGGATTCCCTGAATCATTACAACAGCTTATTGAGATGATAAAGAACCCTGCGGCTAATACTTCTGCTCTATCTGCTAGTAATGCTGGAAAAGATGATAAGGGTCCTGGTCCACTTGCTGCAAACCGGGAAGACATGAACAATGTAGATTCTATTGAACCGGATCCTGCTGGATTCCGTGACCAGGTTTCCATGTTGTTCCAAGATTGGTATAGGATATGTGAACTTCCAGGTGCCAATGATACAGCTTCTACCCATTTCATCTTACAGTTGCATCAGAATGGGTTGCTTAAGGGAGACGACATAACAGATCGCTTTTTCCGAGTGTTGCTGGAACTTGCTGTTGCACATTGCCTATCCACTGAGGTGAATAATTCTGGGGCATTGCAGTCTCCTCAGCAGCTGCCAGCAATGTCATTTCTCGCAATTGATATTTATGCAAAGCTTGTCTTCTATATCTTGAAGGGATCAAACAAACTATTCCTTCTTCCTAAGATTCTGGCAGTTACTGTTAGATGCATTCTAAAAGATGCGGAGGAAAAGAAGGCCTCTTTCAATCCAAGACCATTTTTCAGATTGTTCATCAACTGGCTTCTGGATCTTGGATCACTTGAACCTGTTACTGATGGTGCAAATCTTCAGATTTTGATTGCTTTTGCCAATGCATTTCATGCTTTGCAGCCCCTCAAAGTTCCTGCATTCAGTTTTGCCTGGCTTGAGTTGATTAGTCATAGGAGCTTCATGCCAAAAATGGTGACGGGTAATGGTCAAAAAGGTTGGCCTCATATCCAAAGGTTGCTTGTGGATTTGTTCCAATTCATGGAGCCTTTTCTGAGGCATGCTGAACTTGGAGACCCGGTTCGTTTTCTCTATAAAGGCACTCTTAGGGTGCTCTTGGTGCTACTTCATGACTTCCCAGAGTTCCTATGTGACTATCACTTTACCTTTTGTGATGTTATCCCTCCAAGTTGCATTCAGATGCGAAATATCATTCTTAGCGCATTTCCACGTAGTATGAGGCTACCAGATCCTTCCACTCCCAATTTGAAGATTGATTTGCTTCAAGAAATAACTCAATCGCCTCGCATACTATCAGAGGTTGATGCAGCACTTAAAGCAAAGCAGATGAAAACTGATGTAGATGAATACCTTAAGACAAGGCAACAGAATTCTCCATTTTTGTCTGAACTGAAGGAGAAGCTGCTCCTCTCACCCAATGAAGCTGCCTCAGCTGGGACCCGTTACAATGTGCCACTAATTAACTCCCTTGTGTTGTATGTAGGAATGCAGGGTATTCAGGGACGAACTCCGCATGCACAGTCAGCCGGAATGTTGGCTGTATTTTCTGTTGGTGCTGCATTGGATATTTTTCAGACACTAATTGTGGACTTGGACACGGAAGGGCGTTACCTTTTCCTAAATGCTATTGCTAACCAACTGCGTTATCCCAATACTCACACACACTACTTTTCCTTCATCCTGCTCCATTTGTTTGCAGAGTCTAACCAGGAAATTATCCAAGAACAAATTACAAGAGTCGTGTTAGAACGCTTAATTGTTAATCGACCTCATCCTTGGGGTCTCCTGGTTACTTTTATTGAGCTGGTCAAGAATCGCATGTATAGCTTCTGGAACAGATCTTTCATAAGATGCGCGCCAGAGATCGAAAAACTATTTGAATCACTATTTGAATCAGTCTCAAGATCTTGTGGAGGTCCAAAACCAGTGGATGAGTCTGGATGGGTCTGA 7374 0.4291 MHQSPRIQRNDCYHNNINIHNAITFQIPKSSSSLSISLAHSFLLFALALVCPRFPIVFPVVMILHSSSSLTMADFTSTASDQIRFLLNSLNEVNSDSVFHQLSQFTEFGTVGCILLLRTCLDHFNYVRRDMNDMQNEPILGAVIKHLLDKPNFSTVLSESVKNVEINESFLQSFCNGLQLSLLEKIAISLALSDSENPDARLCGKNFCMAQIEELGASPGSFSCHEQIHNIIMFLKQSEGLSKHADSFMQILSLVQFKDTPPYVLTPVLPDEMHEADFLRNMELFHESGENDFDAILADIQKEMNMGDIVKELGYGCTVDVLQCKEILSLFLPITDKTLSKLLGAIVRTHAGLEDNQSTFLTFGTALGYNNLAELPPLSSWNIDVLIDTVKLLAPQTNWVRVIENLDHEGFFLPSEEAFSFLMAVYKHAYKEPFPLHAICGFVWKNTEGQLSFLKYAASAPPELFTFAHSARQLAYVDAINGHKLQSGHANHAWLCLDLLDVLCQLAEKGHASIVRSILDYPLKHCPDVLLLGMAHINTTYNLFQREVSLAVFPMIVNSAVGSGMILHLWHVNPNLVLRGLMDSQNSDVDSITKIVDICQELKILSSVLEIIPSYYSIRLAAVASRKEFLDLGKWLSSILTTYKDVFFEECLKFLKEVHFSGSQNLSGNSFHQPGAVLNLYTETAATLLKVLKSHTDLVTSGLLKEELESLHISIIDSNPRLQNGGTTDSSASDGYAEDIEAEANSYFHQMFSEQLHINAMVQMLARFKESSVKREKSIFECMIQNLFEEYRFFPKYPERQLKIAAVLFGSVIKHQLVTHLSLGIALRYVLDALRKPADSKMFLFGSLALEQFVGRLVEWPQYCNHILQISHLRSTHSEIVALIEQALARISSGHIDGDGASHASIIGNHNSAQATFGHVELTGSSVIQPGQPHLSMQLQQRHENSFDDRHKASIGSSSDVKPLLSTLGQSSVVTPADASSTNKLHSIVSTSSMLSSSPGFVRPSRGATSAKFGSVLNIETLVAAAEKRETPIEGPGSEVQDKISFIINNISSTNVEAKAKEFDEILKEQYYPWFAQYMVMKRVSIEPNFHDVYLKFLDKVNSKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILGLLVEIYSMPNLKMNLKFDIEVLFKTLAVEMKDVTPTSLLKDRKREIEGNPDFSNKDVGVSQAQLVSDIKPGLVPPVNQVELPPLEVTNPSNPHMLSPYAGPLHITTGPLIDDEKVTPLGLSDQLPTAQGLLQATTNPSPFSQLSTQIPNIGTHVIINPKLSGFGLQMHFQRAVPISMDRAIKEIVTGIVQRSVSIATQTTKELVLKDYAMESDETRILNAAHLMVASLSGSLAHVTCKEPLRTSISNQLRTALQNINIASEILEQAVQLVTNDNLDLGCAVIEQAATDKAISTIDTEIGQQLSVRRKHREGMGSTFFDANMYQQGSMGGVPEPLRPKPGQLSLSQQRVYEDFVRLPWQNQSTQNSHSISGGVSIQSGGTGLTGTSGTVSGQMSPGYSVNTGYEGVPRPIDDISESNLAPHFSASSVHIRAADSVSQHSLEKDSVASFPSTASTPELHTVDSSDAVKDSGASSQPPVSSGAMERLGSSFLEPTLTTRDALDKYQLVAQKLEAVVNNDSREADIQGIISEVPEIILRCVSRDEAALAVAQKVFKGLYDNATNNIHVFAHLAILTAIRDVCKLAVKELTSWVIYSEEERKYNKDITVGLIRSELLNLTEYNVHMAKLIDGGRNKAATEFSISLLQILVIEEPKVISELQSLVDALAKLATKPGFPESLQQLIEMIKNPAANTSALSASNAGKDDKGPGPLAANREDMNNVDSIEPDPAGFRDQVSMLFQDWYRICELPGANDTASTHFILQLHQNGLLKGDDITDRFFRVLLELAVAHCLSTEVNNSGALQSPQQLPAMSFLAIDIYAKLVFYILKGSNKLFLLPKILAVTVRCILKDAEEKKASFNPRPFFRLFINWLLDLGSLEPVTDGANLQILIAFANAFHALQPLKVPAFSFAWLELISHRSFMPKMVTGNGQKGWPHIQRLLVDLFQFMEPFLRHAELGDPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRSMRLPDPSTPNLKIDLLQEITQSPRILSEVDAALKAKQMKTDVDEYLKTRQQNSPFLSELKEKLLLSPNEAASAGTRYNVPLINSLVLYVGMQGIQGRTPHAQSAGMLAVFSVGAALDIFQTLIVDLDTEGRYLFLNAIANQLRYPNTHTHYFSFILLHLFAESNQEIIQEQITRVVLERLIVNRPHPWGLLVTFIELVKNRMYSFWNRSFIRCAPEIEKLFESLFESVSRSCGGPKPVDESGWV* 2458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4796 2457 Pfam CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819 1374 1516 IPR024557 -
Lja3g4796 2457 PANTHER BNACNNG58980D PROTEIN 77 2454 - -
Lja3g4796 2457 Pfam CCR4-NOT transcription complex subunit 1 TTP binding domain 721 890 IPR032193 -
Lja3g4796 2457 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX 77 2454 IPR040398 GO:0017148|GO:0030015
Lja3g4796 2457 Pfam CCR4-Not complex component, Not1 2074 2437 IPR007196 -
Lja3g4796 2457 Gene3D - 2213 2436 - -
Lja3g4796 2457 MobiDBLite consensus disorder prediction 1568 1609 - -
Lja3g4796 2457 MobiDBLite consensus disorder prediction 1897 1923 - -
Lja3g4796 2457 Gene3D - 1923 2212 - -
Lja3g4796 2457 MobiDBLite consensus disorder prediction 1648 1687 - -
Lja3g4796 2457 Pfam CCR4-NOT transcription complex subunit 1 HEAT repeat 547 693 IPR032194 -
Lja3g4796 2457 Gene3D - 1005 1255 - -
Lja3g4796 2457 MobiDBLite consensus disorder prediction 1648 1690 - -
Lja3g4796 2457 MobiDBLite consensus disorder prediction 1568 1605 - -
Lja3g4796 2457 Gene3D - 726 893 IPR038535 -
Lja3g4796 2457 Pfam CCR4-NOT transcription complex subunit 1 CAF1-binding domain 1034 1253 IPR032191 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4796 K12604 - gmx:100783935 4032.64