Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4787 ATGAAGCAATCAAAGGATCCATTCGAAGCTGCATTTGTGGAATCACCACCTGAATCCCCTGTTGAAATCGAGGCCGAGCCAGACGGCGAGGCACAAAACCCTGCATCTAGTTCTGGGGTTGCACAAGTCACTCAAGCCCAGGAAGACGGGAAAAAGCTGAGTAAAACAGGCACCGGCACAAGTGGTAGTGGTGGTGGTGGCAAGAATAAAGATGACGAGGAGGAAGAGGAGGAGGACAACATGGATGTTGAGCTTACCAAGCTCCAGCCCACTGGTGACCCCCAAAAAATGGCCAAGATGCAGGCTATTTTGTCACAATTCACTGAAGAACAGATGAGCAGATATGAGTCTTTTAGAAGGGCTGGATTCCAGAAAGCTAACATGAAAAGGTTATTAGCAAGCATCACTGGGACCCAGAAAATTACTATACCAATAACAATTGTAGTATCAGGGATTGCAAAAATGTTTGTTGGTGAAGTTGTGGAAACAGCTAGAATAGTTATCAAAGAGAGGAAGGAATCTGGACCAATCCGGCCTTGTCATCTGAGAGAAGCATATAGACGACTAAAGCTTGAAGGGAAAGTCTTTAAGAGATCAGTCCCTAGGCTTTTCCGGTAA 618 0.4563 MKQSKDPFEAAFVESPPESPVEIEAEPDGEAQNPASSSGVAQVTQAQEDGKKLSKTGTGTSGSGGGGKNKDDEEEEEEDNMDVELTKLQPTGDPQKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASITGTQKITIPITIVVSGIAKMFVGEVVETARIVIKERKESGPIRPCHLREAYRRLKLEGKVFKRSVPRLFR* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4787 205 MobiDBLite consensus disorder prediction 31 65 - -
Lja3g4787 205 Pfam hTAFII28-like protein conserved region 103 188 IPR006809 GO:0005634|GO:0006367
Lja3g4787 205 PANTHER TAFII28-LIKE PROTEIN-RELATED 1 205 - -
Lja3g4787 205 Gene3D Histone, subunit A 107 196 IPR009072 GO:0046982
Lja3g4787 205 CDD TAF11 107 190 IPR006809 GO:0005634|GO:0006367
Lja3g4787 205 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 11-RELATED 1 205 IPR045127 GO:0005669|GO:0006367|GO:0051123
Lja3g4787 205 MobiDBLite consensus disorder prediction 1 82 - -
Lja3g4787 205 SUPERFAMILY Histone-fold 107 195 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4787 Lja-Chr3 89892231 89894720 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4787 K03135 - gmx:100305481 239.965