Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4647 ATGGAAGCAAGAACTCACATAGCCCTCGTCTCTATCCCTGCCTTAAGCCACCAAGTTTCAATCCTTGAATTTGCCAAGCGACTCGTTCATCTCCACCAAGACAATTTCCAAGTCACATGCATCATCCCCACACTCAGTAATTCACCTACCATTGCCTCCAAACCCTTCTTTAATGCTCTCCCCACAAGCATACAGTGCATTTTCCTACCTCCAGTGAACGTTAAAAATGGTAATGACCCGCTTGAAACTCAACTTCAGATTGCGATTTCTGACGCCATGCCGTCGGTGCGTGAAGCGTTGAGGTCACTCGCTTCTAGCTCCAAGGTGGTTGCTCTGGTTGTTGATGCGTTTGCACATGAAGCTATGGAGTTTGGTAAGGAATTGAACATGTTGTCTTACATCTACTTTCCATGTTCGATCATGATGTTATCGCTGGGCCTGCACTCGTCAAAGCTGGATGAAACTGTTTCTTGTGAGTATAGAGATCATCCCCAACCCATAGAGATTCCTGGTTGCATATCTGTTCATGGCAAAGACCTCCCAAATAGTATTCAGAACAGGTCAAGTCCAGCATACAAGTTCTACCTTCGCCGCTGCCAACAACTTCACATAACAGATGGTATCCTAGTTAATAGCTTCACAGAAATGGAACCAGAAGCCATGAAAGCAATATCCCAAAACGGTAATGGTGCCCCACAAGTACATCCAATTGGGCCTATCACACAAACCTGGTCCAACAACAATAAAAACTGCTCAGAGTGTTTACTATGGCTGGGCCAACAACCACCAAAATCAGTTCTCTATGTCTCATTTGGAAGTGGGGGCACACTTTCCCAAGATCAGATCAATGAGCTTGCATTGGGATTGGAATTGAGCAGGAAAAAATTCTTATGGGTTAATGTGAGAGCACCAAATGATAGTGCCACAGCTAGTTACCTGAGTGATGATAATGAACTTTCTGACCCTTTGCAATTTCTACCTCCAGGATTCTTAGAGAGAACAAAAGGACAGGGTTTTGTTATGTCTGGTTGGGCACCACAGAGTGCGATCCTTAGTCATGGTTCCATTGGTGCTTTCTTAACTCACTGTGGTTGGAATTCGATTCTGGAGAGTGTTGTCCATGGAGTGCCGATGATTGCATGGCCATTGTTTGCTGAACAGAGATTGAATGCTGCTTTGGTTACTGATGGCTTGAAAATTGCTTTGAGGGTGAAAATTGGTGGCAATGGTGTGGTGGTGAAGGAGGAGATTGTTGGTCTTGTAAAGGGTGTAATGGAGGGTTTGGATGGTGGAGAAATATGGAAGAGGGTGAAAGAACTGCAAGGGTTTGCTGCTTGTGCGATGATGGAAGATGGGTCGTCTACAAAGACACTGTCTAAGTTGGCTATCAAATGGAAAAGTTTGGGCACAATCACACAAGACTAA 1425 0.447 MEARTHIALVSIPALSHQVSILEFAKRLVHLHQDNFQVTCIIPTLSNSPTIASKPFFNALPTSIQCIFLPPVNVKNGNDPLETQLQIAISDAMPSVREALRSLASSSKVVALVVDAFAHEAMEFGKELNMLSYIYFPCSIMMLSLGLHSSKLDETVSCEYRDHPQPIEIPGCISVHGKDLPNSIQNRSSPAYKFYLRRCQQLHITDGILVNSFTEMEPEAMKAISQNGNGAPQVHPIGPITQTWSNNNKNCSECLLWLGQQPPKSVLYVSFGSGGTLSQDQINELALGLELSRKKFLWVNVRAPNDSATASYLSDDNELSDPLQFLPPGFLERTKGQGFVMSGWAPQSAILSHGSIGAFLTHCGWNSILESVVHGVPMIAWPLFAEQRLNAALVTDGLKIALRVKIGGNGVVVKEEIVGLVKGVMEGLDGGEIWKRVKELQGFAACAMMEDGSSTKTLSKLAIKWKSLGTITQD* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4647 474 Gene3D Glycogen Phosphorylase B; 252 449 - -
Lja3g4647 474 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 251 395 IPR002213 GO:0008194
Lja3g4647 474 CDD GT1_Gtf-like 6 465 IPR002213 GO:0008194
Lja3g4647 474 PANTHER UDP-GLYCOSYLTRANSFERASE 72B1 1 469 - -
Lja3g4647 474 ProSitePatterns UDP-glycosyltransferases signature. 344 387 IPR035595 -
Lja3g4647 474 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 5 461 - -
Lja3g4647 474 Gene3D Glycogen Phosphorylase B; 6 454 - -
Lja3g4647 474 PANTHER GLYCOSYLTRANSFERASE 1 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4647 Lja-Chr3 88520521 88524084 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4647 6 467 Glycosyltransferase AT1G01420 43.469 4.87e-136 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4647 K08237 - gmx:100775351 622.083