Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4640 ATGGAAATCATTGATGGCGGCGGCAACAAGTTCCTCAACACCGTGCTCCTCCTCTTCGCCACCGTCGCCGTCGCCAAGCTCATCATCACCTTCATCATCCCCAAACCGAAGAAAAACCTCCCCCCAATTCTCGGCGGATTTCCCCTCATCGGCGGCCTCATCCGCTTCCTCAAAGGCCCGATCGTCATGCTCCGAGAAGAGTACCCGAAACTCGGCAGCGTCTTCACCGTCAAACTCTTCCACTGGAACGTCACGTTCTTGATTGGTCCTGAAGTCTCCGCGCACTTCTTCAAGGCGTCGGAATCTGATTTGAGTCAGCAGGAAGTGTATCAGTTCAATGTGCCTACGTTTGGACCTGGCGTGGTTTTCGATGTTGATTATTCTGTTAGGCAGGAGCAGTTTCGATTCTTCACGGAGGCTCTTAGGGTGAACAAGCTTAAGAGCTATGTTAATCAGATGGTTGCAGAAGCTGAGGACTATTTCTCGAAGTGGGGATCAAGTGGTGAGGTTGATTTGAAGTATGAGCTTGAGCATCTTATCATCTTGACTGCGAGTAGATCTCTGTTGGGGCGAGAAGTTCGTGACAAGCTCTTTGATGATGTATCTGCATTGTTCCATGACCTTGACAATGGGATGCTTCCAATCAGTGTTCTCTTCCCATACCTGCCAATTCCGGCTCACAAGCGCCGTGACCAAGCACGCAAGAAGCTTTCTGAAATCTTTGAGAAGATCATAGTTTCTCGCAAAAGTGCCAACAAATCAGAGGATGACATGCTGCAGTGCTTCATTGACTCAAAATACAAAGATGGTCGCCCTACAACTGAAGGTGAAGTCACCGGGCTCCTCATCGCTGCTCTTTTTGCAGGACAACACACCAGTTCAATCACCTCCACTTGGACTGGAGCATATCTCATGTGTAACAACAAGTACCTTTCTGCTGTGGTAGAGGAGCAGAAGGTGTTGATGGAGAAGCACGGGGACAGAGTCGATCATGATGTTTTGGCTGAGATGGACGTCCTGTATCGGTGCATTAAAGAAGCCTTGAGACTCCACCCTCCATTGATCATGCTCCTGAGAAGCTCACATAGTGATTTCAGTGTCACAACAAGAGAGGGGAAAGAGTATGATATTCCCAAGGGTCATATAGTTGCCACATCCCCTGCTTTTGCAAACCGGCTACCTCACATTTTCAAGGACCCTGACACTTACGATCCTGATCGGTTCGCTGTGGGAAGGGAAGAAGACAAGGCGGCTGGCGCATTCTCATACATTTCCTTTGGAGGGGGCAGACATGGATGCCTTGGGGAGCCCTTTGCTTATCTGCAGATTAAAGCAATATGGACTCATTTGCTGAGGAATTTCGAACTGGAGTTGGTGTCTCCTTTCCCTGAGATTGATTGGAATGCCATGGTTGTGGGAGTGAAAGGAAAAGTCATGGTCCGGTATAAGCGAAGGGTGCTTTCCGCTAATCAATAG 1476 0.4892 MEIIDGGGNKFLNTVLLLFATVAVAKLIITFIIPKPKKNLPPILGGFPLIGGLIRFLKGPIVMLREEYPKLGSVFTVKLFHWNVTFLIGPEVSAHFFKASESDLSQQEVYQFNVPTFGPGVVFDVDYSVRQEQFRFFTEALRVNKLKSYVNQMVAEAEDYFSKWGSSGEVDLKYELEHLIILTASRSLLGREVRDKLFDDVSALFHDLDNGMLPISVLFPYLPIPAHKRRDQARKKLSEIFEKIIVSRKSANKSEDDMLQCFIDSKYKDGRPTTEGEVTGLLIAALFAGQHTSSITSTWTGAYLMCNNKYLSAVVEEQKVLMEKHGDRVDHDVLAEMDVLYRCIKEALRLHPPLIMLLRSSHSDFSVTTREGKEYDIPKGHIVATSPAFANRLPHIFKDPDTYDPDRFAVGREEDKAAGAFSYISFGGGRHGCLGEPFAYLQIKAIWTHLLRNFELELVSPFPEIDWNAMVVGVKGKVMVRYKRRVLSANQ* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4640 491 PRINTS P450 superfamily signature 288 305 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja3g4640 491 PRINTS P450 superfamily signature 342 353 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja3g4640 491 PRINTS P450 superfamily signature 424 433 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja3g4640 491 PRINTS P450 superfamily signature 433 444 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja3g4640 491 Pfam Cytochrome P450 42 460 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja3g4640 491 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 426 435 IPR017972 GO:0005506|GO:0016705
Lja3g4640 491 PANTHER CYTOCHROME P450 26 11 484 - -
Lja3g4640 491 Gene3D Cytochrome P450 37 490 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja3g4640 491 PANTHER STEROL 14-DEMETHYLASE 11 484 - -
Lja3g4640 491 PRINTS E-class P450 group IV signature 40 57 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja3g4640 491 PRINTS E-class P450 group IV signature 62 85 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja3g4640 491 PRINTS E-class P450 group IV signature 279 305 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja3g4640 491 PRINTS E-class P450 group IV signature 337 353 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja3g4640 491 PRINTS E-class P450 group IV signature 375 389 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja3g4640 491 PRINTS E-class P450 group IV signature 391 409 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja3g4640 491 PRINTS E-class P450 group IV signature 417 433 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja3g4640 491 PRINTS E-class P450 group IV signature 433 451 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja3g4640 491 SUPERFAMILY Cytochrome P450 37 485 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4640 Lja-Chr3 88433347 88436169 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4640 9 488 Miscellaneous Gene Families AT1G11680 82.988 0.0 830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4640 K05917 - gmx:100810799 854.358