Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4605 ATGGGCGACGAAGAAGAAGAGGAGGTGGTGGCTGAAGTTGAAGCCATGGAAGCCGTATACGGAACCGATTGCCTCCTTCTTCATTCCTTCCCTCCTCATTTCCACCTCTCCCTCAAACCCAGAACCGCTGATGTCTCCTCCGAACAGTTTGTAGAAGTTATTCTAGACGTACGAGCAAGCCCACAGTATCCGAAAGAACCACCTTGTGTTGATCTTGTGGATTGCAAGGGTCTGGATGAACAGAGACAAAAGCATCTATTAAATTACATACAAAGTAAAGCCTGTGAGCTGTCTCCTGGTTTAATACTCGTAGCTCTTTGTGAGGAAGCAGTTGCGAAACTCTCAAGTATGAATCATCCTGATGGTGATTGTCCATTGTGTTTGTTCCCTTTGGTCCCAGACGATCGCCAAAGTGAAACCTTGCCGTTTATGAAATTAATGTCTTGCTTTCATTGTTTTCACAGTGAATGTATCGGTAGGTGGTGGAATTGGCTTCAAATTTCTAAACAAACAGGCTCTTCCAGTTCAGATACTGCTACTGCACGTCCTAACAAAGATAGCTACAAAAAATTGGATGACGGTGTTGGAAATTGCCCAGTCTGTCGCAAGCCTTTTCATGCCAAGGATTTGGATCATGTGCTGGACTTAGTTGGCTCACATCCTTCCCAATCGGATATGGATAATGATGATAAAGTCGATGATGAGGAAAAGCTCCTTCAATCTGAGTATGAGATCATTAGGAGACAGAAATTTGAAGCTATTCTAAATATACAGAAGGAGAAAAGTGGTTTGATTGAACCCAAAATAGATTTAGTAATTACGCCTGGTATGTATCTTCCACAACCAGTTGCAGCGCCGAGCTCCACATCGACCAAGGAATCTGATGAGCAGCAAGAGAGAGATCCACCTGCAGTTGTGTCAGGAAGACATGACAGTGGGACCTCAAATAGGCCAAGTTCTAGTGGGAACATGAATTATGATGCAAGGAGGCAGAGGGGAAGAAGTTATCACAACTCAAGTTCAACTATAAGACAACCAGTTGCAGCGCCGAGCTCCGCGTCGACCAAGGAATCTGATGATCGGCAAGAAAGAGATCCACCTGCAGTTGTGTCAGGAAAACATGGCAGTGGGGCCTCAAATGGGTCTAGTTCTAGTGGGAACAGGAATTACGGTGGAAGGGGGCAGAGAGCAAGAAGTTATCACAACTCTAGTTCAACTGTAAGACATCCTCCAAGAAAACCAGTCCAACAGTGGGCTATGAGAGACAATACTAGCAGTAAGCAATAG 1287 0.4483 MGDEEEEEVVAEVEAMEAVYGTDCLLLHSFPPHFHLSLKPRTADVSSEQFVEVILDVRASPQYPKEPPCVDLVDCKGLDEQRQKHLLNYIQSKACELSPGLILVALCEEAVAKLSSMNHPDGDCPLCLFPLVPDDRQSETLPFMKLMSCFHCFHSECIGRWWNWLQISKQTGSSSSDTATARPNKDSYKKLDDGVGNCPVCRKPFHAKDLDHVLDLVGSHPSQSDMDNDDKVDDEEKLLQSEYEIIRRQKFEAILNIQKEKSGLIEPKIDLVITPGMYLPQPVAAPSSTSTKESDEQQERDPPAVVSGRHDSGTSNRPSSSGNMNYDARRQRGRSYHNSSSTIRQPVAAPSSASTKESDDRQERDPPAVVSGKHGSGASNGSSSSGNRNYGGRGQRARSYHNSSSTVRHPPRKPVQQWAMRDNTSSKQ* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4605 428 PANTHER RING FINGER PROTEIN 25 4 396 IPR039133 GO:0061630
Lja3g4605 428 MobiDBLite consensus disorder prediction 375 411 - -
Lja3g4605 428 SMART ring_2 124 201 IPR001841 -
Lja3g4605 428 SUPERFAMILY RING/U-box 115 208 - -
Lja3g4605 428 ProSiteProfiles Zinc finger RING-type profile. 124 202 IPR001841 -
Lja3g4605 428 SMART RWD2001b 11 117 IPR006575 GO:0005515
Lja3g4605 428 SUPERFAMILY UBC-like 5 110 IPR016135 -
Lja3g4605 428 MobiDBLite consensus disorder prediction 282 428 - -
Lja3g4605 428 ProSiteProfiles RWD domain profile. 11 117 IPR006575 GO:0005515
Lja3g4605 428 MobiDBLite consensus disorder prediction 335 355 - -
Lja3g4605 428 MobiDBLite consensus disorder prediction 309 328 - -
Lja3g4605 428 Pfam RWD domain 7 108 IPR006575 GO:0005515
Lja3g4605 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 216 IPR013083 -
Lja3g4605 428 Gene3D Ubiquitin Conjugating Enzyme 2 119 IPR016135 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4605 K10640 - gmx:100791789 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4605 3 87924721 87936371 Lja3g4605 3 87924721 87936371 ECH