Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4604 ATGGCTATCATGGCGTTGCCACTAGTCATCTCGTTTCTCAAACCCCACACCGCCACCCGCTTCTTCCCCACACTCCTCCGTCGTCGTTTCGCCACCGTCTCCGCCACCTCCACTCCTCCTTCACCTTCTTCCCTCTCCCACCACTCTTCATCTTCTTCTTCTACGAACCCCAACACTGCTCCTCGCAAGGCATCCTCCGTCACCTTCCAGCAAGCCATTCAACGCCTTCAGGAATATTGGGCTTCTGTTGGATGTTCCATAATGCAATGTAGCAACACAGAGGTTGGAGCTGGGACTATGAATCCTCTTACATATTTAAGGGTTCTTGGTCCAGAACCATGGAATGTTGCGTATGTGGAACCTAGCATCCGCCCTGATGATAGTCGATATGGAGAAAACCCAAATAGGCTCCAAAGACACACTCAGTTTCAGGTGATATTGAAGCCTGATCCTGGAAATTCGCAGGACCTTTTTATCCACAGCCTTTCAGCTTTAGGTATTGATGTTACTGCGCATGATATACGATTTGTGGAGGACAACTGGGAGAGTCCGGTTCTTGGTGCTTGGGGTTTGGGTTGGGAAGTCTGGATGGATGGGATGGAGATTACTCAATTCACCTACTTTCAGCAGGCTGGAAGTCTCCCGTTATCTCCTGTATCTGTGGAAATCACTTATGGCCTTGAGCGTATCCTGATGTCGCTGCAGGGAGTTGATCACTTCAAAAAGATAAAATATTCTGATGGAATTACATATGGGGAACTGTTCTTGGAGAATGAAAAGGAAATGAGTGCGTATTACTTGGAGCATGCCAGTGTTGATCATGTTCAAAAACATTTTGATTTCTTTGAGGAGGAAGCTCGTTGCTTGCTTTCTTCAGGCCTTGCAATCCCTGCGTATGATCAACTTCTGAAAACGTCTCATGCTTTTAATATCTTGGACTCTCGAGGCTTTGTTGGAGTAACAGAGCGTGCTCGATATTTTGGTCGCATGCGTAGTTTAGCTCGGCAGTGTGCACAACTTTGGCTGAAGACCAGGGAGATGCTTGGCTTCCCCCTTGGTCTCATCTCTGAACCTGATCAAATTGTATTACCAAAGGAAGTTTTGGAGGCTGCGTGTGAGAAGGTGCATGATCATTCAAGAGCATTTGTTCTTGAAATTGGAACTGAAGAGCTGCCACCTCACGATGTTGTTGATGCAAGCAAACAACTGAAAGATTTAATGTTGCAATTACTGGAACAGCAGAGGTTAAAGCATGGTGAAGTGCAAGTTTTCGGCACCCCTCGTAGATTAGTGGTTGCTGTTGAAAATCTTTTCACAAAACAAACAGAAAAGGAGGTTGAAATTCGAGGGCCTCCTGTTTCAAAAGCATTTGATCATGAAGGAAATCCAACAAAGGCCATTGAGGGTTTTTCACGTAGATACTCTGTTCCGCTGGATTTGGTGTACAGAAAGGTTGATGGGAAAACAGAATATGTATACGCTCGTATAAAAGAGTCTTCAAGACATGCTTTGGAGGTTTTGTCCGAAGATTTGCCTGCTACTATTGCTAAAATTTCTTTTCCAAAGACAATGCGTTGGAATTCACAGGTGATGTTTAGCAGGCCTATTCGTTGGATTCTGGCCCTGCATGGACAAGCAGTAGTCCCATTTATATTTTCTGGGGTGATGAGTGGAAACTTGTCTTGTGGTCTTCGTAATACTGCTTCAGCCGTTGTCCAGGTAGAAAATGCAGAATCATATTCATTTGCAATGAAAAATGCGGGAATCAATGTTGCAGTTGAGGACCGTAAGAAAATTATTGTTGAGCGATCTAATACATTAGCAGAAAGTGTAAATGGCCAAATTCTTATTCCAAATGGTTTGCTGGATGAGGTTGTGAATCTTGTTGAGGCACCTGTTCCAGTGCTTGGAAAGTTTAAAGAAACCTTCTTAGATCTTCCGAAAGAACTTTTGATTATGGTTATGCAAAAGCATCAGAAGTATTTTGCTATATGTGATGCTGATGGGAAATTGTTGCCCTACTTTATAGCTGTTGCGAATGGTGGAATTGATGAGACTACAGTGAGGAAAGGAAATGAATCTGTGCTCAGGGCTCGCTACGAAGATGCTAAGTTCTTTTATGAGATGGACACTCGAAAAAGGTTTTCAGAATTCCGAGAGCAACTGAAAAATATTCTCTTTCATGAGAAGCTTGGAACCATGCTGGATAAAATTACTCGTGTTGAAAACTTGGTTACTAAGCTAAGTTGCATCCTGGATATCGGTGAAGATATGCTACAAATTATCCAGGATGCTGCCTCACTTGCTATGTCTGATCTTGCCACTGCAGTTGTCACTGAATTTACCTCACTTTCAGGAGTTATGGGGCGTCACTATGCCCTTAGAGATGGATACTCTGTGCAGATTGCAGAGGCTTTATTCGAGATCACGCTTCCTAGATTCTCTGGTGACATTCTTCCCAATAGCGATGCTGGCATAGTTTTGGCAATTGCTGATAGGTTAGATAGCCTGGTAGGTTTATTTACTGCTGGCTGTCAACCTAGTTCCTCAAATGATCCATTTGGTCTGCGGAGAATCTCATATGGTCTTGTGCAATTATTGGTAGAAAGGAATAAAAATCTAGATTTTAAAGAGGCTCTGGAACTTGCTGCAGCTGTCCAGCCCCTTAAAGCAGATCCTCATTTGATAGATGAAGTACATCAATTTGTTACTCGAAGATTAGAGCAATTTCTGGTTGACAAGGGGGTGAGTCCAGAATTTGTTCGTTCCATCCTTGCAGAGAGGGCAAATTTTCCCTGTCTAGCCGCAAAATCTGCATATAAAATGGAAGAATTATCAAAAGGCAAGCTTTTCCCCAAAGTAGTGGAAGCATACTCTCGGCCAACAAGAATTGTCCGTGGGAAGGAAATTGAGCTTCATATGGAGGTGGACGTGGCTGCTTTTGAGACAAATGAAGAAAGAGTTTTGTGGAGCACATTTTTGTCAGTCAAAAAGAGTATCAATCCTGGTATTGACATCGATGATTTTGTAGATATTTCATCTCAGCTTGTACAGCCTCTTGAGGATTTCTTTAATAATGTCTTCGTAATGGTGGATGATGACAAGATCAGAGAAAACAGGCTAGCGCTGCTAAAAGGAATTGCTGAACTCCCTAAAGGAATAGCAGACCTTACAGTTATACCAGGATTTTAA 3192 0.4305 MAIMALPLVISFLKPHTATRFFPTLLRRRFATVSATSTPPSPSSLSHHSSSSSSTNPNTAPRKASSVTFQQAIQRLQEYWASVGCSIMQCSNTEVGAGTMNPLTYLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIHSLSALGIDVTAHDIRFVEDNWESPVLGAWGLGWEVWMDGMEITQFTYFQQAGSLPLSPVSVEITYGLERILMSLQGVDHFKKIKYSDGITYGELFLENEKEMSAYYLEHASVDHVQKHFDFFEEEARCLLSSGLAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTREMLGFPLGLISEPDQIVLPKEVLEAACEKVHDHSRAFVLEIGTEELPPHDVVDASKQLKDLMLQLLEQQRLKHGEVQVFGTPRRLVVAVENLFTKQTEKEVEIRGPPVSKAFDHEGNPTKAIEGFSRRYSVPLDLVYRKVDGKTEYVYARIKESSRHALEVLSEDLPATIAKISFPKTMRWNSQVMFSRPIRWILALHGQAVVPFIFSGVMSGNLSCGLRNTASAVVQVENAESYSFAMKNAGINVAVEDRKKIIVERSNTLAESVNGQILIPNGLLDEVVNLVEAPVPVLGKFKETFLDLPKELLIMVMQKHQKYFAICDADGKLLPYFIAVANGGIDETTVRKGNESVLRARYEDAKFFYEMDTRKRFSEFREQLKNILFHEKLGTMLDKITRVENLVTKLSCILDIGEDMLQIIQDAASLAMSDLATAVVTEFTSLSGVMGRHYALRDGYSVQIAEALFEITLPRFSGDILPNSDAGIVLAIADRLDSLVGLFTAGCQPSSSNDPFGLRRISYGLVQLLVERNKNLDFKEALELAAAVQPLKADPHLIDEVHQFVTRRLEQFLVDKGVSPEFVRSILAERANFPCLAAKSAYKMEELSKGKLFPKVVEAYSRPTRIVRGKEIELHMEVDVAAFETNEERVLWSTFLSVKKSINPGIDIDDFVDISSQLVQPLEDFFNNVFVMVDDDKIRENRLALLKGIAELPKGIADLTVIPGF* 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4604 1063 TIGRFAM glyQ: glycine--tRNA ligase, alpha subunit 68 352 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Lja3g4604 1063 CDD GlyRS_alpha_core 68 346 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Lja3g4604 1063 Gene3D Bira Bifunctional Protein; Domain 2 55 270 IPR045864 -
Lja3g4604 1063 PRINTS Glycyl-tRNA synthetase alpha subunit signature 121 136 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Lja3g4604 1063 PRINTS Glycyl-tRNA synthetase alpha subunit signature 307 323 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Lja3g4604 1063 PRINTS Glycyl-tRNA synthetase alpha subunit signature 142 162 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Lja3g4604 1063 PRINTS Glycyl-tRNA synthetase alpha subunit signature 222 237 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Lja3g4604 1063 PRINTS Glycyl-tRNA synthetase alpha subunit signature 173 197 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Lja3g4604 1063 PRINTS Glycyl-tRNA synthetase alpha subunit signature 199 219 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Lja3g4604 1063 Hamap Glycine--tRNA ligase alpha subunit [glyQ]. 67 347 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Lja3g4604 1063 Hamap Glycine--tRNA ligase beta subunit [glyS]. 379 1060 IPR015944 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Lja3g4604 1063 Pfam Glycyl-tRNA synthetase alpha subunit 69 346 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Lja3g4604 1063 Pfam Glycyl-tRNA synthetase beta subunit 382 926 IPR015944 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Lja3g4604 1063 SUPERFAMILY Class II aaRS and biotin synthetases 68 346 IPR045864 -
Lja3g4604 1063 Gene3D Class II aaRS and biotin synthetases; domain 2 271 350 - -
Lja3g4604 1063 TIGRFAM glyS: glycine--tRNA ligase, beta subunit 379 1060 IPR015944 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Lja3g4604 1063 ProSiteProfiles Heterodimeric glycyl-transfer RNA synthetases family profile. 736 1025 IPR006194 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Lja3g4604 1063 SUPERFAMILY HD-domain/PDEase-like 709 863 - -
Lja3g4604 1063 MobiDBLite consensus disorder prediction 36 66 - -
Lja3g4604 1063 PANTHER GLYCYL-TRNA SYNTHETASE 378 1063 IPR015944 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Lja3g4604 1063 ProSiteProfiles Heterodimeric glycyl-transfer RNA synthetases family profile. 68 342 IPR006194 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4604 K14164 - gmx:100787365 1816.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4604 3 87888843 87923512 Lja3g4604 3 87888843 87923512 ECH