Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4593 ATGGCGGCGCCATCAGAGACGAAGAAGGAAGAAGAGGAGCAAGTGGTGAATCCATGGGAGGTTTCAGCCAAGGACGGTGGCAAGATCGATTACGACAAGCTCATCGACCGTTTCGGATGCCAAAGGCTCGACCAATCCCTCATCCAACGCCTCGAGCGACTCACCTCTCAGCCTGCTCACGTATTCCTCCGCCGCGGCGTTTTCTTCGCTCACCGTGATTTTACAGATATTTTGGACGCTTATGAAAAGGGTGATAGGTTTTACTTGTATACCGGTCGAGGACCGTCTTCCGAAGCTTTGCATTTGGGACATTTGATTCCATTCATGTTCACCAAGTATTTGCAAGATACCTTTAAGGTTCCTCTGGTTATACAGCTCACTGATGATGAGAAGTTCTTGTGGAAAAATCTTACTATCGAGGAGAGCCAAAGACTTGCACGGGAGAACGCAAAGGACATCATTGCTTGTGGTTTTGACATTTCAAAGACATTTATCTTCTCTGATTTCAGTTATGTCGGTAGTGCCTTCTACAAGAACATGATGGAGATTGCAAAGCGTGTGACTTATAACCAGGCTGTTGGTATTTTTGGTTTCACTGGGGAAGATCATATTGGAAAAGTTAGTTTTCCACCTGTGCAGGCAGCTCCATCATTTCCGAGTTCATTTCCTCACCTATTTTCTGGCAAAGAAAAACTCCGTTGTTTGATTCCTTGTGCAATTGACCAGGATCCTTATTTTAGAATGACACGAGATGTTGCTCCTAAACTACAATATAACAAACCGGCCTTGATTGAATCAACATTCTTCCCTGCATTACAGGGAGAAACAGGAAAAATGTCTGCCAGTGATCCCAATTCTGCAATATATGTTACTGATTCTGCAAAAGATATAAAGAATAAGGTAAACAAGTATGCGTTCTCCGGTGGGCAAGATTCTATAGAAAAACATAGGCAATTAGGGGCAAATCTTGAGGTAGATATACCAATCAAATACCTTTCCTTTTTCCTAGAAGATGATGATGAACTTGAACACATAAAGAAGGAGTATGGAGCAGGGCGCATGCTCACTGGTGAGGTGAAGCAGCGCCTAGTCGAAGTTTTGACTGCACTAGTGGAAAGACATTGTAGGGCTCGGGCTGCTGTGACTGAAGAGATGGTGGATGCATTTATGGCTGTCAGACCACTTCCCCACATGTTTGACTGA 1203 0.4414 MAAPSETKKEEEEQVVNPWEVSAKDGGKIDYDKLIDRFGCQRLDQSLIQRLERLTSQPAHVFLRRGVFFAHRDFTDILDAYEKGDRFYLYTGRGPSSEALHLGHLIPFMFTKYLQDTFKVPLVIQLTDDEKFLWKNLTIEESQRLARENAKDIIACGFDISKTFIFSDFSYVGSAFYKNMMEIAKRVTYNQAVGIFGFTGEDHIGKVSFPPVQAAPSFPSSFPHLFSGKEKLRCLIPCAIDQDPYFRMTRDVAPKLQYNKPALIESTFFPALQGETGKMSASDPNSAIYVTDSAKDIKNKVNKYAFSGGQDSIEKHRQLGANLEVDIPIKYLSFFLEDDDELEHIKKEYGAGRMLTGEVKQRLVEVLTALVERHCRARAAVTEEMVDAFMAVRPLPHMFD* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4593 400 SUPERFAMILY Nucleotidylyl transferase 13 393 - -
Lja3g4593 400 TIGRFAM trpS: tryptophan--tRNA ligase 86 391 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Lja3g4593 400 Gene3D - 282 399 - -
Lja3g4593 400 PANTHER BNAA01G33520D PROTEIN 8 400 - -
Lja3g4593 400 PANTHER TRYPTOPHANYL-TRNA SYNTHETASE 8 400 - -
Lja3g4593 400 Pfam tRNA synthetases class I (W and Y) 85 370 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lja3g4593 400 CDD TrpRS_core 88 370 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Lja3g4593 400 PRINTS Tryptophanyl-tRNA synthetase signature 152 171 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Lja3g4593 400 PRINTS Tryptophanyl-tRNA synthetase signature 100 116 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Lja3g4593 400 PRINTS Tryptophanyl-tRNA synthetase signature 234 255 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Lja3g4593 400 PRINTS Tryptophanyl-tRNA synthetase signature 278 288 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Lja3g4593 400 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 95 105 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lja3g4593 400 Gene3D HUPs 6 281 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4593 Lja-Chr3 87776492 87785658 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4593 K01867 - gmx:100787194 699.508