Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4580 ATGCATCAGAAGAAATCTGAAATTCAGATCGGAAAAGAAAGCACCGGCGTCTCTTCCGATTTCAACCCTAAACCACCGTTCCTCCTCCACCACAACCACCACCACCACCACCACCAACACCAACAACAGCAGATAACACAAATTGAAATCTCAATTCCACCTTCATCATCATCTGCACCTTACAAGAGACCCTCACTTTCCAAATCCCAAACCCTATTCAAATTCCCGAACAAACCAACCTGTAAATTCTCCAAACCCACCGCCTCATTCTCCTCCCTCTCCGCCGCCGCAATCCGCCGTCTCCGCCTCCACCTCCGCCTCGTCCTCCTCCTCTCCCTCCCGTTTTTCTACTTTCTCGTCACCCACCCGGCGGAGTCCTTTCTTCTCGACTTCCTCTCCGCCTTCGCCTTCTCCGCCGGGCTTCTCCTCTCGCTCCACCTCGCTGTCCCTCGTCTCCCGTCCTCCATACGATTCAGGCTCAGGCCTCGGCCGTCGCTGCCGGTGGTGTGGACAGTCGGGTGGCGCCGTAAGGCGGCGGCTGGGTGCGGTGTTAGGGTTTACGCGAACGGGGACGTGTACGAGGGGGAGTTTCAGGGAGGGAAGTGTGTAGGGAGTGGGGTGTATTATTACAGTATGAATGGGAGGTATGAAGGGGATTGGGTGGATGGGATGTATGATGGGTGTGGGGTGGAGACTTGGGCTAGAGGGAGTAGGTATAGAGGGCAGTATAGGCAAGGGTTGAGGCATGGGTTTGGGGTGTATAGGTTTTACACTGGAGATGTTTATGCAGGGGAATGGTCTAGTGGACAGAGCCATGGATGTGGAGTTCATACCTGTGATGATGGGAGTAGATATGTTGGGGAGTTCAAGTGGGGGGTCAAGCATGGACTTGGCCACTACCATTTTAGAAATGGGGATACATATGCTGGTGAATACTTTGCGGACAAGATGCATGGGTTTGGGGTATATTCTTTTGCAAATGGCCATCGTTATGAAGGATCCTGGCATGAGGGGAAAAGACAAGGGCTTGGAATGTATACATTTAGAAATGGGGAGACCCAATCTGGTCACTGGCAAAATGGAATCCTTGACATTCCAAGCACACAGAACCCCACCTATCCAGTTTCTCCTGTTGGTGTCAATCATTCCAAAGTACTTAATGTGGTGCAGGAAGCAAGAAGAGCAGCTCAGAAGGCCTACGATGTAGGCAAGGTAGATGAAAGAGTAAATAGAGCAGTAGCAGGCGCTAATAGAGCAGCTAATGCTGCTAGAGTAGCTGCTGTCAAGGCTGCGCAGAGGCAAATGCATAATAATGTTAACAGGGAGAGCCTCCCAATTCCTATTGTGTGA 1350 0.5148 MHQKKSEIQIGKESTGVSSDFNPKPPFLLHHNHHHHHHQHQQQQITQIEISIPPSSSSAPYKRPSLSKSQTLFKFPNKPTCKFSKPTASFSSLSAAAIRRLRLHLRLVLLLSLPFFYFLVTHPAESFLLDFLSAFAFSAGLLLSLHLAVPRLPSSIRFRLRPRPSLPVVWTVGWRRKAAAGCGVRVYANGDVYEGEFQGGKCVGSGVYYYSMNGRYEGDWVDGMYDGCGVETWARGSRYRGQYRQGLRHGFGVYRFYTGDVYAGEWSSGQSHGCGVHTCDDGSRYVGEFKWGVKHGLGHYHFRNGDTYAGEYFADKMHGFGVYSFANGHRYEGSWHEGKRQGLGMYTFRNGETQSGHWQNGILDIPSTQNPTYPVSPVGVNHSKVLNVVQEARRAAQKAYDVGKVDERVNRAVAGANRAANAARVAAVKAAQRQMHNNVNRESLPIPIV* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4580 449 MobiDBLite consensus disorder prediction 1 46 - -
Lja3g4580 449 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED 49 439 - -
Lja3g4580 449 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 234 361 - -
Lja3g4580 449 Gene3D - 223 267 - -
Lja3g4580 449 Gene3D - 268 313 - -
Lja3g4580 449 Gene3D - 173 222 - -
Lja3g4580 449 Gene3D - 314 378 - -
Lja3g4580 449 PANTHER - 49 439 - -
Lja3g4580 449 Pfam MORN repeat 262 284 IPR003409 -
Lja3g4580 449 Pfam MORN repeat 193 214 IPR003409 -
Lja3g4580 449 Pfam MORN repeat 239 261 IPR003409 -
Lja3g4580 449 Pfam MORN repeat 216 238 IPR003409 -
Lja3g4580 449 Pfam MORN repeat 331 352 IPR003409 -
Lja3g4580 449 Pfam MORN repeat 308 330 IPR003409 -
Lja3g4580 449 Pfam MORN repeat 174 192 IPR003409 -
Lja3g4580 449 Pfam MORN repeat 285 307 IPR003409 -
Lja3g4580 449 SMART morn 214 235 IPR003409 -
Lja3g4580 449 SMART morn 191 212 IPR003409 -
Lja3g4580 449 SMART morn 260 281 IPR003409 -
Lja3g4580 449 SMART morn 329 350 IPR003409 -
Lja3g4580 449 SMART morn 283 304 IPR003409 -
Lja3g4580 449 SMART morn 237 258 IPR003409 -
Lja3g4580 449 SMART morn 306 327 IPR003409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4580 Lja-Chr3 87655736 87661458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4580 185 364 Acyl Lipid Metabolism Gene Families AT1G60890 37.778 8.25e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4580 - - gmx:100784010 572.007