Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4568 ATGTATGTGCTTAATCTCATAGGGAAGGCATGCTCAAATGAAGGCTTCCAAGAGGATGTTCATACTGCAAAGAAATTAAAACATATGGTTGACTCAGAGGAGGAGGAAGAGGAAGAGCAGGAGGAGGAGGAGGAGGTGGAGGACAGTGACAAATCTGATGGTGAACTCAATGCGGATGCAGAGCAAAATATTGGATATGACACTGTTTGTGCAATTTGCGATAATGGTGGTGAAATACTTCCTTGTGAAGGAAGATGTCTGAGATCCTTCCATGCAACTGAAGAGGCTGGTAGAGATTCACTTTGCGCATCGCTTGGCTACTCTAGTGCTGAAGTTAATGACTTTCCAAACTTCTACTGTAATAATTGTAAATATAAGGAGCACCAATGCTTTGCATGTGGCAAATTGGGTTCATCTAATGTATCATCTAAAGCAGAGGTATTTCCTTGTGTTACTGCAAATTGTGGTCAGTACTACCATCCTGAATGTGTTGCAAGGCTACTCTCTCCTGACACTGTCACTAAATATGAGGAAACGATAAAGAGCATTGCCAATGGAAACGCATTTGTCTGTCCTCTTCATATATGTGTTTCATGCAGACAAGGTGAAAACAAAAATGTTCATGATTTGCAATTTGCAATGTGCAGACGCTGCCCTAAGGCTTTCCACAGGAAATGCTTGCCCAAGGAAATTTCCTTTACAGATAATTATTATGAGGGCATTGAGCAGAGGGCTTGGGATGGTCTACTTGACCAACGAATTTTGATGTATTGCACGGATCATGAGATAGTTCCAGAGCTTGGTACTCCTGCTAGAGACCATCTAATATTTCCTAATGTGAAGATCAGATTTAAGATAGGCAGACCCATATTAGCAGCAAAAAAGAAGGTTGCTATATCATCGATGCGAAGTCTTGAAGATCTTCGTCCTAAGAAGACATTGGTACCAAACCCGGTTATAAAGGAAAGGGTTAGCATAAAAAATGATGGTTCTTCCAAAGCTATGGAGAAAATATGTCCCAAGAAAGACATACGTCTGTCAACAGGATCAGTCATGTTTGACAGGGATAGAGAATACATGAAGCTTAAAAAGATGTCCTTGCCTAATAGTTCCTTTCCAAGGCCTGATAGAAAATTCTCTGTAGGAAAAGATAACTTGTCCTGTAGTTCAAGATTACAAGAAGCTAGACCCCAGCAGCAAAAATTTATTGGTAGAAGCATTGAAGAAACAAGTTTGGAGAAGCCTCTAGGGAGAAAAGTCCAGACTTCACTCTACTCTTCTGATGCTGATATGGAAAGCCGAATGTTGTCTTTGAGGAAAGACTCCAACTCTGCATTTAACATGGAAGAATTCAAAAAGAACCATCAAATCTTCGATACAAGTTCAAGTTTCACAAAAACTCTAATTGATAAGAATCTTACTGAAGGAAAATTAGAGGGCTCTGTTAAGGCTGTTCAAACAGCTTTACAAAGGTTAGAAGAAGGATGTAGTATTGAGGATGCAAAAGCTATTTGTGAGCCAGGAATCGTCCATCAGCTTTTTGTTTGGCAGAAGCGGCTCAAGGTCTACCTTGCACCTTTTCTTCATGGCATGCGATATACTTCCTATGGTCGCCATTTCACTAAAATAGACAAGCTTAAGGAGGTTGTTGATAGGCTTCATTGTTATGTGCAAAATGGTGACACGGTGTTAGATTTCTGTTGTGGTTCTAACGACTTCAGTTGTCTAATGAAATCAAAGCTTGAAGAGACAGGGAAGTCGTGTTCATTTAAGAATTACGATTTATTCCAAGCCAAGAATGATTTCAATTTTGAAAAGAGAGATTGGATGAGTGTTAATGCTGAAGAACTACCCAATGGTTCTGAACTGATCATTGGGCTGAATCCTCCTTTTGGGGTTAGGGGTTCTCTTGCTAACAAATTTATTGGCAAAGCATTGACTTTTAGGCCAAAACTCCTTATACTTATCGTGCCAAAAGTAACGAAACGACTTGATAGAAAGAAAGGTGGATATAATTTGATTTGGGAGGATGATGAGTTGCTTTCAGGAAAATCATTTTATCTGCCTGGTTCTGTTGATACACGCGAGAAGCAACTGGATGACTGGAACGTGAAGCCACCACCGCTCTACCTTTGGAGTCGCCCTGACTGGACTGCTCGGCACAGGGAAATCGCTCAAAGGCATGGCCACATCAAGGAGAACTATAATCCGCAAGCGAAAGGAAAAGTTATAAAGAATTATCTTATGGAGGAAAATCATGACTGCTACCAGGATTACCGTGGCTTGCATGCACCGGATGATTATCTAAGCATATTTGATGGCGTTCCGGATGATACTGCCGACAATACACTGGAGGAAGGTGCAACTAGCAAGACTACTCTTGGCCAGTTGAAGGAGTCAGTAATTTCTGATTGTGGAAGAGAAATGGATAGGGAGGATTGGTTACCCACTAATGATGATTCAGATATGGTCACAGATATGGAAATATCATCTCAATGA 2499 0.4074 MYVLNLIGKACSNEGFQEDVHTAKKLKHMVDSEEEEEEEQEEEEEVEDSDKSDGELNADAEQNIGYDTVCAICDNGGEILPCEGRCLRSFHATEEAGRDSLCASLGYSSAEVNDFPNFYCNNCKYKEHQCFACGKLGSSNVSSKAEVFPCVTANCGQYYHPECVARLLSPDTVTKYEETIKSIANGNAFVCPLHICVSCRQGENKNVHDLQFAMCRRCPKAFHRKCLPKEISFTDNYYEGIEQRAWDGLLDQRILMYCTDHEIVPELGTPARDHLIFPNVKIRFKIGRPILAAKKKVAISSMRSLEDLRPKKTLVPNPVIKERVSIKNDGSSKAMEKICPKKDIRLSTGSVMFDRDREYMKLKKMSLPNSSFPRPDRKFSVGKDNLSCSSRLQEARPQQQKFIGRSIEETSLEKPLGRKVQTSLYSSDADMESRMLSLRKDSNSAFNMEEFKKNHQIFDTSSSFTKTLIDKNLTEGKLEGSVKAVQTALQRLEEGCSIEDAKAICEPGIVHQLFVWQKRLKVYLAPFLHGMRYTSYGRHFTKIDKLKEVVDRLHCYVQNGDTVLDFCCGSNDFSCLMKSKLEETGKSCSFKNYDLFQAKNDFNFEKRDWMSVNAEELPNGSELIIGLNPPFGVRGSLANKFIGKALTFRPKLLILIVPKVTKRLDRKKGGYNLIWEDDELLSGKSFYLPGSVDTREKQLDDWNVKPPPLYLWSRPDWTARHREIAQRHGHIKENYNPQAKGKVIKNYLMEENHDCYQDYRGLHAPDDYLSIFDGVPDDTADNTLEEGATSKTTLGQLKESVISDCGREMDREDWLPTNDDSDMVTDMEISSQ* 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4568 832 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 513 639 IPR029063 -
Lja3g4568 832 SMART PHD_3 69 124 IPR001965 -
Lja3g4568 832 SMART PHD_3 129 195 IPR001965 -
Lja3g4568 832 SMART PHD_3 196 262 IPR001965 -
Lja3g4568 832 Coils Coil 23 52 - -
Lja3g4568 832 MobiDBLite consensus disorder prediction 28 56 - -
Lja3g4568 832 CDD PHD3_NSD 196 261 - -
Lja3g4568 832 CDD PHD2_NSD 129 194 - -
Lja3g4568 832 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 125 IPR013083 -
Lja3g4568 832 MobiDBLite consensus disorder prediction 811 832 - -
Lja3g4568 832 PANTHER EDM2-LIKE PROTEIN1 18 770 - -
Lja3g4568 832 MobiDBLite consensus disorder prediction 33 54 - -
Lja3g4568 832 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 217 IPR013083 -
Lja3g4568 832 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 18 770 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4568 Lja-Chr3 87539586 87554417 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4568 - - gmx:100810533 1140.18