Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4547 ATGGCGATCCTGTGGAAGCACGTGAGGCCGTCGCCGTCGCTGCTCGACCGGCTCAAGCGGCACGTCACCGGCGGCTCCTACTTGCTGTCGAGATCCTTCACCACAATGGAAGGTCATCGCCCTTCGATCGTCCACAAACGCAGCCTTGACATTCTCCATGATCCTTGGTTCAACAAAGGAACAGCTTTTTCCATGACAGAACGTGACCGTCTTGATCTACGAGGACTGCTTCCTCCAAATGTTGTGTCTCCTGATGTACAGATTGAGCGCTTCATGGTTGATCTGAAGAGGCTTGAAGTTCAAGCAAGAGATGGACCTTCTGATCCTAATGCACTGGCCAAGTGGCGGATACTTAACCGCTTGCATGACAGAAATGAGGTCATGTACTATAAGGTTTTGATTGCCAATATTGAGGAATATGCCCCAATAGTATATACTCCAACAGTAGGTCTTGTATGTCAGAACTATAGTGGACTGTTTCGAAGGCCAAGAGGAATGTATTTCAGTGCTGAAGATCGTGGAGAAATGATGTCTATGGTCTATAACTGGCCAGCTGAGCAGGTTGATATGATTGTAGTTACTGATGGGAGCAGAATTCTGGGACTTGGAGATCTTGGAGTTCACGGAATTGGCATTGCCGTTGGAAAGCTTGATCTATATGTTGCTGCTGCGGGGATAAATCCTCAAAGGGTACTTCCTGTCATGATTGATGTGGGTACTAACAATGAGAAGTTGCTTCATGATCCCTTATATTTGGGATTGCCACAGCATCGTCTTGATGGGAATGAATATCTTGCTGTTGTGGATGAATTTATGGAGGCTGTCTTTACACGCTGGCCAAATGTGATTGTGCAGTTTGAAGATTTCCAGAGCAAATGGGCTTTTAAGTTATTACAGCGGTATAGAAATACCTACAGAATGTTCAATGATGATGTGCAGGGAACAGCCGGTGTTGCAATTGCCGGACTTCTAGGTGCTGTAAGAGCGCAAGGAAGGCCAATGATTGACTTCCCGAAGCAAAAGATTGTTGTTGCAGGTGCTGGAAGTGCTGGGATTGGCGTTCTTAATGCAGCAAGAAAAACAATGGCGAGGATGTTGGGTAATAATGAAGCAGCTTTTGAGAGTGCAAAGAGTCAATTTTGGGTTGTTGATGCTAAGGGATTAATTACAGAAGGACGTGAAAATATAGATCCTGATGCCCTTCCTTTTGCGAGAAATTTGAAAGAAATGGATCGCCAAGGACTGAGGGAAGGAGCAAGCCTTGTTGAAGTGGTAAAACAAGTTAAGCCTGATGTCCTTCTAGGACTATCTGCTGTTGGAGGATTGTTTTCAAAAGAGGTATTAGAGGCACTCAAGAATTCAACATCAACAAGACCAGCTATATTTGCAATGTCAAATCCAACAAAGAATGCTGAATGCACCCCTGAAGAAGCATTCTCCATTGTGGGTGAGAACACCATATTTGCAAGTGGAAGTCCATTCAGTGATGTGGATCTCGGAAATGGGTGTATTGGCCACTCCAACCAGGGAAACAACATGTACCTCTTTCCAGGCATCGGTCTTGGAACTCTTTTGTCTGGCTCTAGAATCATATCTGATGGCATGCTACAGGCTGCTGCTGAACGTCTGGCTGCATATATGAGTGATGAGGAGGTCCTCAAAGGGACTATTTTCCCTTCAATATCCAGAATTCGAGATATTACGAAGGAGGTAGCTGCAGCTGTTATAAAAGAAGCTGTGGTGGAGGATCTAGCTGAAGGATATCATGGAATGGATGCTCGAGAGCTGCGCAAGCTTAGTGAGGTTGAACTTGGGGAATATGTGAAGAATAACATGTGGTGTCCAGAGTATCCAACACTAGTTTACAAGCAAGATTGA 1878 0.451 MAILWKHVRPSPSLLDRLKRHVTGGSYLLSRSFTTMEGHRPSIVHKRSLDILHDPWFNKGTAFSMTERDRLDLRGLLPPNVVSPDVQIERFMVDLKRLEVQARDGPSDPNALAKWRILNRLHDRNEVMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMMSMVYNWPAEQVDMIVVTDGSRILGLGDLGVHGIGIAVGKLDLYVAAAGINPQRVLPVMIDVGTNNEKLLHDPLYLGLPQHRLDGNEYLAVVDEFMEAVFTRWPNVIVQFEDFQSKWAFKLLQRYRNTYRMFNDDVQGTAGVAIAGLLGAVRAQGRPMIDFPKQKIVVAGAGSAGIGVLNAARKTMARMLGNNEAAFESAKSQFWVVDAKGLITEGRENIDPDALPFARNLKEMDRQGLREGASLVEVVKQVKPDVLLGLSAVGGLFSKEVLEALKNSTSTRPAIFAMSNPTKNAECTPEEAFSIVGENTIFASGSPFSDVDLGNGCIGHSNQGNNMYLFPGIGLGTLLSGSRIISDGMLQAAAERLAAYMSDEEVLKGTIFPSISRIRDITKEVAAAVIKEAVVEDLAEGYHGMDARELRKLSEVELGEYVKNNMWCPEYPTLVYKQD* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4547 625 Pfam Malic enzyme, N-terminal domain 122 302 IPR012301 GO:0004471
Lja3g4547 625 ProSitePatterns Malic enzymes signature. 308 324 IPR015884 GO:0004471
Lja3g4547 625 Gene3D - 310 625 - -
Lja3g4547 625 Gene3D - 46 309 IPR037062 GO:0004471
Lja3g4547 625 SMART malic_2 122 302 IPR012301 GO:0004471
Lja3g4547 625 PIRSF ME 17 623 IPR001891 GO:0004470|GO:0004471
Lja3g4547 625 PANTHER MALIC ENZYME-RELATED 22 621 - -
Lja3g4547 625 PANTHER MALIC ENZYME 22 621 - -
Lja3g4547 625 Pfam Malic enzyme, NAD binding domain 312 580 IPR012302 GO:0051287
Lja3g4547 625 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 312 622 IPR036291 -
Lja3g4547 625 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 30 311 IPR046346 -
Lja3g4547 625 SMART Malic_M_2 312 580 IPR012302 GO:0051287
Lja3g4547 625 CDD NAD_bind_1_malic_enz 312 615 - -
Lja3g4547 625 PRINTS Malic enzyme signature 188 217 IPR001891 GO:0004470|GO:0004471
Lja3g4547 625 PRINTS Malic enzyme signature 283 301 IPR001891 GO:0004470|GO:0004471
Lja3g4547 625 PRINTS Malic enzyme signature 224 246 IPR001891 GO:0004470|GO:0004471
Lja3g4547 625 PRINTS Malic enzyme signature 128 152 IPR001891 GO:0004470|GO:0004471
Lja3g4547 625 PRINTS Malic enzyme signature 308 324 IPR001891 GO:0004470|GO:0004471
Lja3g4547 625 PRINTS Malic enzyme signature 456 472 IPR001891 GO:0004470|GO:0004471
Lja3g4547 625 PRINTS Malic enzyme signature 342 358 IPR001891 GO:0004470|GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4547 Lja-Chr3 87289422 87316305 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4547 K00028 - gmx:100799344 1107.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4547 3 87289422 87316305 Lja3g4547 3 87289422 87316305 ECH