Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4546 ATGGAGAGCTTAATCGGCTTGGTCAACAGAATCCAGCAAGCTTGCACCAAGCTCGGTGACTACGGCGGTGCCGACAACAACAACTTCGCCGCCTCTCTCTGGGAAGCTCTCCCTTCCGTCGCCGTCGTCGGTGGCCAGAGTTCCGGTAAATCTTCTGTTCTGGAAAGCATCGTTGGACGCGATTTTCTGCCTCGAGGATCAGGGATTGTGACGAGACGTCCATTGGTGTTGCAGCTTCATAAGCTAGACGATGACACGGAGGAATATGCTGAGTTTCTTCACATGCCAGGGAGAAAGCTAACCAATTATGCCCAAGTCCGCCAGGAAATTCAGGATGAAACTGATAGATTAACGGGAAAGTCAAAACAAATATCTAATGTTCCAATTCATCTTAGCATTTATTCTCCTCATGTTGTCAACCTAACTTTGATTGATTTACCAGGGTTGACTAAAGTTGCCATAGAGGGACAGCCTGAGACAATTGCTGAAGACATTGAAAATATGGTTCGATCTTATGTTGAGAAGCCTAATTCGATCATATTGGCAATATCTCCCGCCAACCAAGACATAGCAACTTCTGATGCAATCAAACTTGCCAGGGAAGTAGATCCCTCAGGTGAGAGAACATTTGGAGTTTTGACAAAACTGGATTTGATGGACAAAGGAACTAACGCATTGGATGTCCTTGAAGGAAGATCTTATCGCTTGCAACTTCCGTGGGTTGGTATAGTAAATCGATCCCAAGCAGATATCAATAAAAATGTTGATATGATTGTTGCCAGACGCAGGGAGCGTGAGTATTTTGCAACCAGTCCTGACTATGGGCACTTGGCTCATAAAATGGGCTCAGAATACCTTGCAAAACTTCTCTCACAGCACTTGGAGTCAGTAATTAAGGCGCGGATACCTAGTATAACATCTTTGATAAACAAAAGCATTGAAGAACTTGAATCGGAGATGGATCATCTTGGGAGACCAATTGCTGTTGATGCTGGGGCTCAACTGTACACCATCCTAGACCTTTGCCGCGCATTTGAACGGATATTCAAGGAGCATTTAGATGGAGGGCGGGCAGGAGGAGATAGGATATATAATGTCTTTGACAATCAGCTTCCTGCTGCTCTACGGAAGCTTCCAATTGACAGACATCTTTCTCTTCAGAATGTCAAGAAAGTGGTGTCCGAGGCAGATGGTTACCAGCCTCACTTAATTGCCCCAGAGCAAGGTTACCGGCGCCTTATTGAGGGGGCTCTCAGTTACTTCAGAGGCCCAGCTGAAGCTTCAGTTGACGCAGTTCACTTTGTCTTGAAAGAACTTGTGAGGAAATCATTAGCTGAAACTCAGGAACTGAAACGTTTCCCAACTCTTCAAGCGGAAATAGCCTCAGCTACAAGTGAGGCTTTGGAGAGGTTCCGTGACGAGAGCAAGAAGACAACAGTTCGGCTCGTGGATATGGAAGCTTCGTACCTCACTGTGGATTTCTTCCGAAGACTTCCTGAAGAAATGGAGAGAGCTGGAAATCCCTCAAATCCGGCTGATCGTGCTAATCCGCCTAATCGTGCTAATCCTGCCAATCAAGCTGCCCCAAATGTGGATCGATATGGAGAAGGACATTTTAGGAGGATTGGATCAAATGTGTCATCCTATATAGGAATGGTGTCAGACACACTAAGAAACACGATTCCAAAGGCTGTGGTTTATTGTCAGGTCAGACAAGCAAAACTGTCATTGCTAAACCATTTCCTTACACAAATAGGACAGAAAGAGCCTAAACAATTAGCAGAGTTGTTAGATGAAGACCCTACAGTGATGGAGAGGAGACAAAAATGTTTTAAAAGGCTTGAACTATATAAAGCAGCAAGGGATGAAATCGATTCTGTTTCTTATGCACGATGA 1896 0.4494 MESLIGLVNRIQQACTKLGDYGGADNNNFAASLWEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKLDDDTEEYAEFLHMPGRKLTNYAQVRQEIQDETDRLTGKSKQISNVPIHLSIYSPHVVNLTLIDLPGLTKVAIEGQPETIAEDIENMVRSYVEKPNSIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQLPWVGIVNRSQADINKNVDMIVARRREREYFATSPDYGHLAHKMGSEYLAKLLSQHLESVIKARIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILDLCRAFERIFKEHLDGGRAGGDRIYNVFDNQLPAALRKLPIDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGALSYFRGPAEASVDAVHFVLKELVRKSLAETQELKRFPTLQAEIASATSEALERFRDESKKTTVRLVDMEASYLTVDFFRRLPEEMERAGNPSNPADRANPPNRANPANQAAPNVDRYGEGHFRRIGSNVSSYIGMVSDTLRNTIPKAVVYCQVRQAKLSLLNHFLTQIGQKEPKQLAELLDEDPTVMERRQKCFKRLELYKAARDEIDSVSYAR* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4546 631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 311 IPR027417 -
Lja3g4546 631 PANTHER DYNAMIN 2 630 IPR022812 -
Lja3g4546 631 SMART GED_2 534 627 IPR003130 GO:0003924|GO:0005525
Lja3g4546 631 PANTHER DYNAMIN 1E-LIKE PROTEIN 2 630 - -
Lja3g4546 631 Gene3D Dynamin, middle domain 329 597 - -
Lja3g4546 631 CDD DLP_1 37 303 IPR001401 GO:0003924|GO:0005525
Lja3g4546 631 ProSiteProfiles GED domain profile. 539 631 IPR020850 -
Lja3g4546 631 Pfam Dynamin GTPase effector domain 536 627 IPR003130 GO:0003924|GO:0005525
Lja3g4546 631 Pfam Dynamin central region 224 491 IPR000375 -
Lja3g4546 631 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 34 303 IPR030381 GO:0005525
Lja3g4546 631 SMART dynamin_3 1 254 IPR001401 GO:0003924|GO:0005525
Lja3g4546 631 Gene3D - 1 312 IPR027417 -
Lja3g4546 631 PRINTS Dynamin signature 227 246 IPR022812 -
Lja3g4546 631 PRINTS Dynamin signature 37 55 IPR022812 -
Lja3g4546 631 PRINTS Dynamin signature 135 152 IPR022812 -
Lja3g4546 631 PRINTS Dynamin signature 62 79 IPR022812 -
Lja3g4546 631 PRINTS Dynamin signature 204 220 IPR022812 -
Lja3g4546 631 PRINTS Dynamin signature 185 203 IPR022812 -
Lja3g4546 631 MobiDBLite consensus disorder prediction 503 531 - -
Lja3g4546 631 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 63 72 IPR019762 -
Lja3g4546 631 MobiDBLite consensus disorder prediction 512 526 - -
Lja3g4546 631 Pfam Dynamin family 40 215 IPR045063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4546 Lja-Chr3 87275009 87282878 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4546 - - gmx:100790977 1063.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4546 3 87275009 87282878 Lja3g4546 3 87275009 87282878 ECH