Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4540 ATGTCTACGCTACTTCACTCCTCTTTCACCATCACTTCTTCTTCTTCCTCCTCCTTCTCTCACATCACTCCATTCCTCTCTTCCCCTCGCATCTCACTCCGAAACGGCGTCAAATGTAAGGTAATCGGAGCGGTGAGGCTTGACAATGGGAGGCCAAGTCCGGCTGAGTTTGCTGTTAGCAGCGGCGGAAGTGCGATTCCTAGCTTCTTGGTGCCGCCAAACGCGCGCATCCAGGATCTGGTTAACGGAAATGACACTCGCCTTCGAATATTTTCCGGTACCGCTAACCCTGCTCTTGCTCAGGAAATTGCATGCTACATGGGACTGGAGCTTGGAAAAATAAAGATAAAACGTTTTGCTGATGGTGAGATATACGTTCAGCTGCAAGAAAGTGTCAGAGGTTGTGATGTGTTTCTTGTGCAGCCCACATGTCCTCCTGCCAATGAAAATCTTATGGAGCTGCTAATAATGATCGATGCCTGCAGGAGAGCTTCAGCCAAAAATATTACAGCAGTCATTCCCTATTTTGGATATGCTAGAGCTGATAGAAAGACTCAAGGGCGTGAATCCATTGCTGCCAAGCTTGTAGCAAATTTGATTACTGAAGCAGGTGCAAATCGTGTTCTTGCTTGTGACCTCCATTCTGGGCAGTCCATGGGCTACTTTGATATTCCAGTTGATCATGTGTATGGACAGCCTGTTATACTTGATTACCTTGCCAGCAAGACTATTTGTTCAGATGATTTGGTAGTTGTCTCACCAGATGTTGGTGGTGTTGCTAGAGCACGTGCTTTCGCCAAAAAATTATCTGATGCTCCTTTAGCTATTGTTGATAAAAGGCGTCATGGGCATAATGTTGCTGAGGTGATGAATTTGATAGGTGATGTGAAGGGAAAGGTAGCAGTTATGGTAGATGACATGATTGATACTGCTGGAACTATTAGCAAAGGTGCAGCTCTATTGCATCAAGAAGGTGCTAGAGAAGTCTATGCATGCACTACTCATGCTGTTTTCAGTCCTCCTGCTATAGAGAGGTTGTCAAGCGGTTTGTTTCAAGAAGTTATCATTACAAATACAATTCCAGTGGCGGAACAGAACTATTTCCCCCAACTAACTGTCCTATCAGTGGCCAACCTTCTGGGAGAGACTATATGGCGTGTTCATGATGACTGCTCAGGTGGAATTGAACCTTATTCCAGCTTGGGCATTGATTGA 1215 0.4535 MSTLLHSSFTITSSSSSSFSHITPFLSSPRISLRNGVKCKVIGAVRLDNGRPSPAEFAVSSGGSAIPSFLVPPNARIQDLVNGNDTRLRIFSGTANPALAQEIACYMGLELGKIKIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKTICSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACTTHAVFSPPAIERLSSGLFQEVIITNTIPVAEQNYFPQLTVLSVANLLGETIWRVHDDCSGGIEPYSSLGID* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4540 404 PANTHER RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER 49 403 IPR005946 GO:0000287|GO:0004749|GO:0009165
Lja3g4540 404 Pfam Phosphoribosyl synthetase-associated domain 289 392 IPR005946 GO:0000287|GO:0004749|GO:0009165
Lja3g4540 404 SMART Pribosyltran_N_2 88 204 - -
Lja3g4540 404 TIGRFAM ribP_PPkin: ribose-phosphate diphosphokinase 89 391 IPR005946 GO:0000287|GO:0004749|GO:0009165
Lja3g4540 404 Pfam N-terminal domain of ribose phosphate pyrophosphokinase 88 204 IPR029099 -
Lja3g4540 404 ProSitePatterns Phosphoribosyl pyrophosphate synthase signature. 212 227 IPR000842 GO:0000287|GO:0004749|GO:0009156|GO:0044249
Lja3g4540 404 CDD PRTases_typeI 247 359 IPR000836 -
Lja3g4540 404 Gene3D - 91 389 IPR029057 -
Lja3g4540 404 SUPERFAMILY PRTase-like 153 389 IPR029057 -
Lja3g4540 404 Hamap Putative ribose-phosphate pyrophosphokinase [prs]. 88 398 IPR037515 GO:0004749
Lja3g4540 404 Gene3D - 231 374 IPR029057 -
Lja3g4540 404 PANTHER RIBOSE-PHOSPHATE DIPHOSPHOKINASE-RELATED 49 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4540 Lja-Chr3 87177282 87183819 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4540 K00948 - gmx:100816430 706.827