Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4531 ATGGCACAACTAAGTCCAATTATCATTCTAGTTGTGTGTGCTTTCTTCATATTTAGATCAACCATAGCACTAGAGATAACTCTCAATGTTGTCAATTTTGGGGCGAAACCAGATGGTGAAACAGACTCCACAAAAGCATTCCTTAGCGCATGGGCAAGAGCATGCAGCTCAACAACACCAGCTACCATTTATGTGCCGCTAGGAAGGTTCTTAGTTGGAAATGCAGTGTTCAAAGGGCAGTGCAGGAACAAGGGCATCACGGTTCGCATTGATGGTGTGCTAGTTGCACCTTCGAACTATGATGTTATTGGAAATGAAGGAAACTGGTTGTTTTTTGATGATGTTGATGGAGTTTCAATTGTTGGTGGTGTGCTTGATGGGCAAGGCACAAGTCTCTGGGATTGTAAGAGGTCTGGTGGAAAGAGTTGCCCAACTGGTGCTACGAACTTAAGATTTACCAACTCCAACAATATTGCTATCAATGGGGTGACCTCTCTGAGCAGCCAAATGTTCCACATAGTTATAGACCGATGCCACAATGTCAAAGTACAAGGTGTGAAGGTATCAGCTGCAGGAAACAGTCCAAACACTGATGGCATTCATGTTCAACTCTCATCAAGTGTCACCATCCTCAGCTCCACCATAGCAACAGGTGATGACTGCATCTCAATCGGTCCCGGAACAACTAACTTGTGGATAGAAAACATCGCTTGTGGACCAGGTCATGGAATCAGTGTTGGAAGTTTGGGGAAGGAAGTTGAAGAGCTTGGTGTGCAAAATGTGACAGTTAAAACAGTTAAATTTACAGGAACTAAAAATGGTGTGCGAATTAAGTCTTGGGGCAGACCTAGTGATGGGTTCGCAAGGGACATCCTTTTCCAACATGTTACCATGCTTAATGTCCAAAATCCCATTGTGATAGACCAAAATTATTGCCCCAATGAGAAGAATTGTCCAGGTCAGGTTTCTGGGGTGAAAATTAGCAATGTCATGTACCAAGATATCCATGGAAGTTCTGCTACAGAAGTTGCAGTTAAATTAGATTGTAGTCCGAATAATCCATGCACTGGAATAAGTTTGGAAGATGTGGATCTTACTTTTGAAAACAAACAAGCAGAAGCTTCATGCAATCATGCTGGAGGAGCCACATCTGGTGTAGTTCATCCCAACAATTGTTTCTAG 1182 0.4289 MAQLSPIIILVVCAFFIFRSTIALEITLNVVNFGAKPDGETDSTKAFLSAWARACSSTTPATIYVPLGRFLVGNAVFKGQCRNKGITVRIDGVLVAPSNYDVIGNEGNWLFFDDVDGVSIVGGVLDGQGTSLWDCKRSGGKSCPTGATNLRFTNSNNIAINGVTSLSSQMFHIVIDRCHNVKVQGVKVSAAGNSPNTDGIHVQLSSSVTILSSTIATGDDCISIGPGTTNLWIENIACGPGHGISVGSLGKEVEELGVQNVTVKTVKFTGTKNGVRIKSWGRPSDGFARDILFQHVTMLNVQNPIVIDQNYCPNEKNCPGQVSGVKISNVMYQDIHGSSATEVAVKLDCSPNNPCTGISLEDVDLTFENKQAEASCNHAGGATSGVVHPNNCF* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4531 393 SMART pbh1 178 204 IPR006626 -
Lja3g4531 393 SMART pbh1 322 362 IPR006626 -
Lja3g4531 393 SMART pbh1 258 279 IPR006626 -
Lja3g4531 393 SMART pbh1 205 226 IPR006626 -
Lja3g4531 393 SMART pbh1 288 309 IPR006626 -
Lja3g4531 393 SMART pbh1 228 248 IPR006626 -
Lja3g4531 393 Pfam Glycosyl hydrolases family 28 55 377 IPR000743 GO:0004650|GO:0005975
Lja3g4531 393 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 9 392 - -
Lja3g4531 393 Gene3D - 19 392 IPR012334 -
Lja3g4531 393 SUPERFAMILY Pectin lyase-like 13 393 IPR011050 -
Lja3g4531 393 ProSitePatterns Polygalacturonase active site. 235 248 IPR000743 GO:0004650|GO:0005975
Lja3g4531 393 PANTHER - 9 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4531 Lja-Chr3 87077031 87079070 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4531 27 393 Glycoside Hydrolase AT3G59850 65.217 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4531 K01184 - gmx:100784002 639.417