Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4526 ATGGCGGCGATGTTGGGTGGCGCCACTCCATGGTCCAAGGTTGTTTCTGCTCCCATTTTTCACCAAACCCACACTGCACGCCGCCGCACCTTCTTCTTCCCAAGAGCCTTCTCAGTCACTGCACATTCTTCACCACAACAACCAGTTCGTGTTCGTTTCGCTCCTTCTCCCACTGGTAACCTTCACGTTGGTGGTGCTAGAACAGCCTTGTTCAATTACTTGTTTGCTAGGTCCAAAGGTGGGAAATTTGTCTTGAGAATTGAGGATACTGACTTGGAGAGGTCTACCCGGGAATCTGAGGAGGCCTTGCTTCGAGATCTTTCTTGGCTTGGCCTTGATTGGGATGAAGGTCCCGGTGTTGGTGGGGATTATGGTCCATATAGGCAGTCTGAGAGGAATTCTTTGTACAAACAGCATGCTGAGAAACTCCTCCAATCGGGTCAAGTTTATCGCTGCTTCTGTTCTAATGAGGAACTAGAGAAAATGAAGGAGGTTGCTAAGCTAAAGCAACTACCTCCAGTATACACAGGTAAATGGGCCAGTGCGACAAATGGGGAAGTAGAAGAAGAGCTCAAAAAAGGAACTCCTTACACCTACCGGTTTCGTGTCCCCAAAGGAAGTTTAAAAATTAATGACATAATACGAGGCGAAGTTGTTTGGAACTTGGATACACTTGGAGATTTTGTGATAATGAGGAGTAATGGCCAGCCTGTTTATAACTTTTGTGTGACAGTTGATGATGCTACCATGGCTATTTCTCATGTCATCAGAGCAGAGGAGCATTTACCGAACACTCTAAGACAAGCATTAATATACAAGGCACTAGAATTTCCCATGCCTCACTTTGCACATGTTTCCTTGATTTTAGCTCCTGATCGGAGTAAATTATCAAAAAGACACGGAGCAACATCAGTGGGTCAGTTCAAGGAGATGGGATACCTACCTCAAGCAATGGTGAATTACCTAGCATTATTAGGTTGGGGTGATGGGACTGAAAATGAGTTTTTCACTCTTGATCAACTTGTTGAAAAATTCACTATAGAACGAGTCAACAAAAGTGGTGCTGTTTTCGATTCCACAAAGTTAAGGTGGATGAATGGTCAGCATTTAAAAGCACAGCCATCAGAGGAGTTGAAAAGTCTTATCGGAGAGCGGTGGAAGACATGTGGCTTGCTTAACGAATCAACAGGGCCCTTCATAGATGAAGCAGTTCAACTACTTAAGGATGAGGTTTACTTGATAACTGAGGCAGACAAGTCACTTGCTAACTTGCTGTCTTATCCTCTACATTCTACTTTGCAGAGCAATGAAGCAGAATCTGTCATACAAGATAATCTTTCTGATTTCTGTGCTAGCCTCTTGGCTGCCTATGATAGTGGTGATCTGGTAGCTGCACTTGAAGAAGGCCCAGCTGGGTGGCAAAAGTGGGTGAAAGGCTTTGGTAAATCACTTAAGCGCAAGGGAAAATCACTTTTCATGCCGCTCCGGATTCTGCTGACTGGGAAACTACATGGACCTGATATGGGAGCTAGTGTTGTTTTACTCCATAAAGCTGGTACTACTGATATCATAGCTCCTGAAGCTGGCTTTGTGACAGTGGATGAAAGATTCAAAATACTTAGGGAAATTAACTGGGAAACATTGTCCAAGGATATTCCTGTGAAGGAGACTGCTGCTTCAGTCTAA 1686 0.4431 MAAMLGGATPWSKVVSAPIFHQTHTARRRTFFFPRAFSVTAHSSPQQPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTRESEEALLRDLSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQHAEKLLQSGQVYRCFCSNEELEKMKEVAKLKQLPPVYTGKWASATNGEVEEELKKGTPYTYRFRVPKGSLKINDIIRGEVVWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALEFPMPHFAHVSLILAPDRSKLSKRHGATSVGQFKEMGYLPQAMVNYLALLGWGDGTENEFFTLDQLVEKFTIERVNKSGAVFDSTKLRWMNGQHLKAQPSEELKSLIGERWKTCGLLNESTGPFIDEAVQLLKDEVYLITEADKSLANLLSYPLHSTLQSNEAESVIQDNLSDFCASLLAAYDSGDLVAALEEGPAGWQKWVKGFGKSLKRKGKSLFMPLRILLTGKLHGPDMGASVVLLHKAGTTDIIAPEAGFVTVDERFKILREINWETLSKDIPVKETAASV* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4526 561 Pfam Anticodon binding domain 395 520 IPR045462 -
Lja3g4526 561 Hamap Glutamate--tRNA ligase [gltX]. 48 531 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Lja3g4526 561 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 55 66 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lja3g4526 561 PANTHER GLUTAMATE--TRNA LIGASE 41 542 - -
Lja3g4526 561 Gene3D HUPs 39 373 IPR014729 -
Lja3g4526 561 Pfam tRNA synthetases class I (E and Q), catalytic domain 49 364 IPR020058 GO:0004812|GO:0005524|GO:0043039
Lja3g4526 561 PANTHER GLUTAMATE--TRNA LIGASE, MITOCHONDRIAL-RELATED 41 542 - -
Lja3g4526 561 SUPERFAMILY An anticodon-binding domain of class I aminoacyl-tRNA synthetases 358 518 IPR008925 GO:0000049
Lja3g4526 561 Gene3D - 431 524 IPR020751 -
Lja3g4526 561 PRINTS Glutamyl-tRNA synthetase signature 237 247 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Lja3g4526 561 PRINTS Glutamyl-tRNA synthetase signature 253 261 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Lja3g4526 561 PRINTS Glutamyl-tRNA synthetase signature 52 64 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Lja3g4526 561 PRINTS Glutamyl-tRNA synthetase signature 66 77 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Lja3g4526 561 PRINTS Glutamyl-tRNA synthetase signature 81 94 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Lja3g4526 561 TIGRFAM gltX_bact: glutamate--tRNA ligase 49 522 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Lja3g4526 561 CDD GluRS_core 49 371 IPR033910 GO:0006424|GO:0008270
Lja3g4526 561 SUPERFAMILY Nucleotidylyl transferase 49 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4526 Lja-Chr3 87032174 87038541 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4526 K01885 - gmx:100810730 961.059