Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4517 ATGAAGAGCTTAATCACTGGCATTTTACTTCTTGGTTTTATTTCATCCTGTGTATGCCAAAACACTATTTATAATGTGATGGACTTTGGTGCTCGTGGCAATGGCAAATTTGATGATTCACATGCATTTTTGAGTGCATGGCATACAACGTGTAGGACTTCAGGGACAACAACTCTAGTTATACCAGCAGGAAAAACGTTCCTTGTGACCAACACAGTTACGCTAACAGGTCCTTGCATGAGCACAAGAATTAACATAGAGATTCAAGGGGAAATTGTTGCACCTTCTTTTGATGAATGGGGGCCTGCTGATAAATCCAAATGGATTTCAATTTATTATGTCAACCATCTCACAATCAATGGCGCCGGAGGGAAAATCGATGGCTTGGGTTTTACATGGTGGGAAAGATGCAGAAATTGTTTCCGACCCAGAACCTTGAGTTTCCATGGTTGCAATGATCTTACTGTAAGCCATCTGCACCTCGTTAATAGTCCTGGAGGTCACATAGCTCTAGATGGTTCCATTGGTGCAAGTTTCTCTCATATTCACATTCAAGCTCCTGCTAACAGCCCCAACACTGATGGCTTTGACATTGCTAATTCTAGAAATATCTTGATACGAAATTCCAACATAGAAGCTGGTGATGATTGTATTGCCATTAATGGTGGTACATCTTTCATCAATGTTACTCGAGTTGCTTGTGGACCAGGTCATGGGATAAGCATTGGCAGTCTTGGAAGAGGTGGTGCTCATGAGATCGTCGAAGAGGTTTATGTATATGACTGCATTTTCACGGGGACTTCAAATGCAGCAAGAATCAAAACAGTTTCAGCGGATACATCAGTGGTGGTCAGTGATGTGACATATCGTGGAATCCATGGAACTTCTACGGCTGATTTAGCTATCAAGTTAGATTGCTCCACATCGGGATGTTTCAACATTGTGTTGGATCAAATTAACATTGTCTCTGCCATACCAGGAAGAAAGACTTATGCTTCTTGCCACAATGCCCATGGTACAGTTAGATCTTCTATTCCAAGTGTCCCTTGCTTGTTGAGGTGA 1062 0.419 MKSLITGILLLGFISSCVCQNTIYNVMDFGARGNGKFDDSHAFLSAWHTTCRTSGTTTLVIPAGKTFLVTNTVTLTGPCMSTRINIEIQGEIVAPSFDEWGPADKSKWISIYYVNHLTINGAGGKIDGLGFTWWERCRNCFRPRTLSFHGCNDLTVSHLHLVNSPGGHIALDGSIGASFSHIHIQAPANSPNTDGFDIANSRNILIRNSNIEAGDDCIAINGGTSFINVTRVACGPGHGISIGSLGRGGAHEIVEEVYVYDCIFTGTSNAARIKTVSADTSVVVSDVTYRGIHGTSTADLAIKLDCSTSGCFNIVLDQINIVSAIPGRKTYASCHNAHGTVRSSIPSVPCLLR* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4517 353 Pfam Glycosyl hydrolases family 28 51 283 IPR000743 GO:0004650|GO:0005975
Lja3g4517 353 ProSitePatterns Polygalacturonase active site. 231 244 IPR000743 GO:0004650|GO:0005975
Lja3g4517 353 Gene3D - 18 348 IPR012334 -
Lja3g4517 353 PANTHER - 15 277 - -
Lja3g4517 353 PANTHER - 278 351 - -
Lja3g4517 353 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 15 277 - -
Lja3g4517 353 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 278 351 - -
Lja3g4517 353 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Lja3g4517 353 SMART pbh1 201 222 IPR006626 -
Lja3g4517 353 SMART pbh1 254 275 IPR006626 -
Lja3g4517 353 SMART pbh1 174 200 IPR006626 -
Lja3g4517 353 SUPERFAMILY Pectin lyase-like 7 352 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4517 Lja-Chr3 86970676 86974286 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4517 23 346 Glycoside Hydrolase AT4G32380 44.985 1.17e-78 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4517 K01184 - gmx:100782390 374.4