Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4516 ATGCTGGGGCTACTAACTTGTCTATTAATACTTGGTTTTGCTTCACAATGTCTATGTGTGAGGTGGAATGATGTTGCAGGAACGTACATATCTTACAATGTGATGGATAACGGTGCTCGTGGTGATGGCATATCAGATGATTCAAAAGCATTTTTAAGTGCATGGCAGAAAGTTTGTGCAACCGAAGGGAGAGCAACTCTAGTTATACCACCAAGAAAGATCTTCATGGTGACAAACCTATTCTTAGATGGTCCTTGCAAGGCAATAAGAGTTCGCATTCAGATTAAAGGGAAATTAATTGCACCTTCTAAGAATGCATGGGGTGGTGAGAGGTCAAGTATGATTAGGATTTCATTCGTAAATGCTCTCATAGTTGATGGCGGTGGAATAATCGATGGCTATGGTTCTACTTGGTGGAACCTACCCCAATCTCCTCGACCAGTGATGTTGAGTTTCCATGCTTGCAATAATCTTTTGGTTCGTGACTTGATGTTCACAAATAGTCCCGGAGCTCACATAACCGTAGATGGTTCCATCAATGCAGTATTCTCTCATGTAAACATTCAAGCTCCTGCTAATAGCCCCAACACTGACGGATTTGATATTGCTAATTCGAGAAATATCTTGATAGAAGATTCCAACATTGGAACTGGTGATGATTGTATTGCCATCAATGGTGGTACCGCTAAAATCAATGCTACTCGACTTGTTTGTGGACCTGGCCATGGGATAAGCATTGGCAGCCTTGGCAGGAATAGAGGTCATGAGACAGTTGAAGAAATTTACGTACAGAATTGCAGCTTCATAGGGACTACAAATGGAGCAAGAATCAAGACAGTTGAAGATTCTGCGGTGAAAGTGAGTGATGCAAGATATCTTGGGTTTACAGGGACTTCTGCCAGTGACTTAGCTATTAACATAGATTGCTCCTCATTTGGTTGTTCCAACATTCTATTAGATCAAATTAATATTGCCCCTTCTCAAGCAGGAAAGAAGATTGGCACTACTTGCAAAAATGCCCGTGGAGCAACAGTTGGAAATGCTATAATTCCCAGTGTCTCTTGTTTATAG 1071 0.4136 MLGLLTCLLILGFASQCLCVRWNDVAGTYISYNVMDNGARGDGISDDSKAFLSAWQKVCATEGRATLVIPPRKIFMVTNLFLDGPCKAIRVRIQIKGKLIAPSKNAWGGERSSMIRISFVNALIVDGGGIIDGYGSTWWNLPQSPRPVMLSFHACNNLLVRDLMFTNSPGAHITVDGSINAVFSHVNIQAPANSPNTDGFDIANSRNILIEDSNIGTGDDCIAINGGTAKINATRLVCGPGHGISIGSLGRNRGHETVEEIYVQNCSFIGTTNGARIKTVEDSAVKVSDARYLGFTGTSASDLAINIDCSSFGCSNILLDQINIAPSQAGKKIGTTCKNARGATVGNAIIPSVSCL* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4516 356 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 1 280 - -
Lja3g4516 356 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 282 348 - -
Lja3g4516 356 SMART pbh1 258 279 IPR006626 -
Lja3g4516 356 SMART pbh1 205 226 IPR006626 -
Lja3g4516 356 SMART pbh1 25 48 IPR006626 -
Lja3g4516 356 SMART pbh1 178 204 IPR006626 -
Lja3g4516 356 Gene3D - 26 352 IPR012334 -
Lja3g4516 356 Pfam Glycosyl hydrolases family 28 59 292 IPR000743 GO:0004650|GO:0005975
Lja3g4516 356 ProSitePatterns Polygalacturonase active site. 235 248 IPR000743 GO:0004650|GO:0005975
Lja3g4516 356 PANTHER - 1 280 - -
Lja3g4516 356 PANTHER - 282 348 - -
Lja3g4516 356 SUPERFAMILY Pectin lyase-like 30 351 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4516 Lja-Chr3 86963718 86966246 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4516 32 345 Glycoside Hydrolase AT5G44840 39.444 2.84e-78 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4516 K01184 - gmx:100820332 360.533