Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4509 ATGGCTCTTCAGGCTGCTTCTTTGGTTCCTGCTTCTCTTTCCATGCTCAAAGAGGGAAAGTCTCTCAAGGACTCTACCCTTTTTGGCCTTTCATTATCAGAACCTCTCAAAGCTGATTTCAGCTCTTCTGCATTGAGGTGCAAGAGAGAATTCAAACAAAAATTTGGTGCTGTGAGGGCTGAGACTGCTGCTACAGCTTCTCCGGCGGTTAATTCGTCTGCACCTGAAGCCAAGAAAACATTGAGGAAGGGTTGTGTTGTGATTACTGGGGCATCCTCTGGATTGGGCCTTGCCACTGCCAAGGCTTTGGCTGAGACAGGAAAATGGCATGTGATAATGGCCTGCAGGGATTTCCTCAAAGCTGCAAGAGCTGCAAAATCTGCTGGAATAGCTAAGGAAAACTACAGCATTATGCACTTAGACCTCTCCTCTCTCGACAGCGTTCGCCAATTTGTAGATAACTTCAGGCGATCAGAAATGCCTCTGGATGTGCTTGTTTGCAATGCTGCTGTTTACTTGCCAACTGCTAAGGAACCTACATTCACTGCTGATGGCTTTGAACTCAGTGTTGGGACTAACCATCTAGGGCATTTCCTCCTCTCACGCCTGTTGCTTGAAGACTTGAACAAATCTGATTACCCGGGTAGGCGCATGATCATTGTCGGCTCAATCACAGGAAACACAAACACATTGGCTGGGAATGTACCTCCCAAGGCTAACCTTGGTGACTTGAGGGGACTTGCGGGTGGCTTGAACGGGCTAAACAGTTCAGCCATGATAGATGGTGGAGACTTTGATGGGGCCAAGGCATACAAGGACAGCAAAGTCTGTAACATGCTCACGATGCAAGAGTTCCACAAGCGATACCACGAGGAAACCGGAATCACATTCGCGTCTCTTTACCCAGGTTGCATTGCCACAACAGGCTTGTTTAGAGAGCACATTCCCTTGTTCAGAACCCTGTTCCCTCCATTCCAGAAGTACATTACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCACAGGTTGTGAGTGATCCAAGTCTCACAAAATCTGGTGTTTACTGGAGCTGGAATAAAACCTCTGCTTCATTTGAAAACCAGTTGTCTCAGGAGGCCAGCGATCCCGAGAAGGCTCGCAAGGTGTGGGAGGTTAGTGAGAAACTAGTTGGTTTGGCCTAA 1191 0.4786 MALQAASLVPASLSMLKEGKSLKDSTLFGLSLSEPLKADFSSSALRCKREFKQKFGAVRAETAATASPAVNSSAPEAKKTLRKGCVVITGASSGLGLATAKALAETGKWHVIMACRDFLKAARAAKSAGIAKENYSIMHLDLSSLDSVRQFVDNFRRSEMPLDVLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLEDLNKSDYPGRRMIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLNGLNSSAMIDGGDFDGAKAYKDSKVCNMLTMQEFHKRYHEETGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKTSASFENQLSQEASDPEKARKVWEVSEKLVGLA* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4509 396 PRINTS Glucose/ribitol dehydrogenase family signature 293 310 IPR002347 -
Lja3g4509 396 PRINTS Glucose/ribitol dehydrogenase family signature 85 102 IPR002347 -
Lja3g4509 396 PRINTS Glucose/ribitol dehydrogenase family signature 160 171 IPR002347 -
Lja3g4509 396 Gene3D - 72 396 - -
Lja3g4509 396 PANTHER - 1 395 IPR005979 GO:0016630
Lja3g4509 396 PANTHER NADPH-PROTOCHLOROPHYLLIDE OXIDOREDUCTASE 1 395 - -
Lja3g4509 396 TIGRFAM LPOR: light-dependent protochlorophyllide reductase 82 396 IPR005979 GO:0016630
Lja3g4509 396 CDD LPOR_like_SDR_c_like 83 395 - -
Lja3g4509 396 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 81 363 IPR036291 -
Lja3g4509 396 Pfam short chain dehydrogenase 85 228 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4509 Lja-Chr3 86907135 86909452 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4509 K00218 - gmx:100785637 697.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4509 3 86907135 86909452 Lja3g4509 3 86907135 86909452 ECH