Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4505 ATGCAACGTTCATTGGCAATGAGCTTGTTCCAACGCAGGTTTTTCAGCCAGCAAAGGCGATCTCAGCTGTTGGCAAAGCGAGTGGTTACACCGTGTGATGTGTTCCTGAACCACAGGAGCACGGACACAAAGCGAACTGTGGCCACTCTCCTCTATGACTACTTGAGGAGGCAAGGATTGAGCCCTTTCTTGGACGAGAAGAGCATGAGGCCAGGGGACAAGCTGTTTGATAAGATTAATGGCGCCATTTTCGAGTCCCGGATCGGGGTGGCGGTGTTCTCCCCTCGCTACTGTGAGTCCTACTTCTGCCTTCATGAGCTGGCGCTTCTCATGGAGTGCGGGAAGAAGGTGATTCCCATCTTCTGTGACGTGAAGCCTTCTCAGCTTCGCGTTCTTAATAACCCGAAGTGGTCCGCGGAGGAGCTCCGGAGGTTCAAGGAGGCTCTTGAGGAGGCTAAGGACACCGTGGGGCTCACCTTCAATTCTTCCAAAGGGAACTTGTCTGAAATAGTTACTAATGCTTCTGACATTATCATTGGCAATATGATAGAGCTTGAGAATGAAGAGCTGATGAAGAAACAAAACTTGCCAATTCTTCTTTAG 603 0.5008 MQRSLAMSLFQRRFFSQQRRSQLLAKRVVTPCDVFLNHRSTDTKRTVATLLYDYLRRQGLSPFLDEKSMRPGDKLFDKINGAIFESRIGVAVFSPRYCESYFCLHELALLMECGKKVIPIFCDVKPSQLRVLNNPKWSAEELRRFKEALEEAKDTVGLTFNSSKGNLSEIVTNASDIIIGNMIELENEELMKKQNLPILL* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4505 200 Pfam TIR domain 33 130 IPR000157 GO:0007165
Lja3g4505 200 SMART till_3 31 155 IPR000157 GO:0007165
Lja3g4505 200 PANTHER COP1-INTERACTING PROTEIN-RELATED 26 194 - -
Lja3g4505 200 ProSiteProfiles TIR domain profile. 30 178 IPR000157 GO:0007165
Lja3g4505 200 PANTHER TOLL-INTERLEUKIN-RESISTANCE (TIR) DOMAIN FAMILY PROTEIN 26 194 - -
Lja3g4505 200 Gene3D - 28 182 IPR035897 -
Lja3g4505 200 SUPERFAMILY Toll/Interleukin receptor TIR domain 32 157 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4505 Lja-Chr3 86853927 86854909 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4505 34 158 Miscellaneous Gene Families AT1G57830 33.333 7.98e-14 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4505 - - gmx:100785101 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4505 3 86853927 86854909 Lja3g4505 3 86853927 86854909 ECH