LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g4497	ATGGCCAACTTCCTCGCTCAGTTCCAAACCATTAAGAACTCCTCCGATCGCCTCGTCATTTCAGTGGAGGATGTGAGTGACTTGTGGCCAACTGTAAAGCCTGCTTTCGAGGCGCGATTGCCGTTTAAAAAGGCGAGTTTGAATAACAAGACGCGGAACCCTGTCTTGGTGGAGACTTTGCCGGCCGAGTTCATATTAACTACTGATTCGAGACTGCGGAGCCGGTTCCCTCAGGAGCAGTTGTTGTTCTGGTTTCGAGAGCCGTATGCAACTGTTGTGCTGGTTACCTGTGAGGATCTCGATGAGTTCAAAACCATCCTTAAACCACGCCTGAAATTAATTGTCCAAAATGATGAAAGGGAATGGTTTATTGTATTTGTATCTAAAGCTCATCCAGCTAATGATCAGGCAAGCAAAATGGCAAAGAAGGTTTATGCTAAACTTGAAGTCGAGTTTAGTTCCAAAAAAAGAGAAAGATGCTGCAAATATGATATGCATTTCCCTGAAGCGAATTTTTGGGAGGACCTGGAATCAAAGATAACCGAATGCATTAGAAATACATTGGATAGGCGTGTACAGTTTTATGAGGATGAAATACGAAAGCTCAGTGAACAGCGCCTCATGCCAGTCTGGAACTTCTGTAATTTTTTCATACTAAAGGAAAGCTTGGCATTTATATTTGAAATGGGTCACCTTCATGAAGATGCCTTACGGGAGTATGATGAACTTGAACTCTGCTATCTTGAAACAGTTAACATGAGTGGAAAGCAAAGAGACTTTGGAGGGGGGGAGCGTGGTGATGATCAGGCGGCAGTTCTCAATCCAGGAAACAAAGCATTGACACAGATTGTTCAAGAGGATTCGTTCAGGGAGTTTGAATTCAGACAGTATCTATTTGCCTGTCAATCAAAGCTCTTATTCAAGCTAAATCGTCCCATTGAGGTTGCATCACGAGGTTATTCATTCATAATAAGCTTCTCGAAATCCTTGGCATTGCATGAGCGTATTCTGCCTTTTTGTATGCGGGAAGTCTGGGTGATAACTGCTTGTTTGGCCTTAGTTGAAGCAACCACTTCCAATTATAATGATGGACTGATGGTGCCTGACATAGAGAAGGAGTTTTTTCGTCTTCTGGGTGACCTATATTCTCTTGGTAGAGTTAAGTTCATGAGGCTTGCCTATTTAGTTGGGTATGGAACTGAAATAGAAAGAAGTCCTGTCAACAGTGCTTCCCTCAGCTTGCTACCTTGGCCTAAGCCAGCTGTTTGGCCTTCAGTCCCTGCTGACGCATCATCAGAGGTTCTTGACAAAGAAAAGCTGATTCTCCAAACAACTCCTAGAGCCAAGCACTTTGGTATCCAGAGGAAACCCCTGCCTCTGGAACCTACAGTACTTCTACGAGAAGCCAATAGGCGGAGGGCTTCACTTTCAGCTGGAAATGTGTTTGAAATATTTGACAGTCGCCAGGGTCCAGTGGAAGGATCAGGTTTCGATGCGTCCTCCAGGATGTCACCACAAAAAGTACATGCAAGTTCCATGTCACGCACTAATTCTTCACCAGGAAACTTTGATGGATCAATTGACCGACCTATGAGGCTTGCTGAGATCTATGTTGCCACTGAGCATGCTTTGAAGCAGACAATTTCTAATCAGGAGCTGTTGAAATCATTATCATCATCTGAGGAGTTTGAGCAAAAATATTTAGAGCTAACTAAAGGTGCTGCTGACAATTACCATCGTTCCTGGTGGAAAAGACATGGAGTGGTCCTTGATGGTGAGATAGCTGCTGTTGCCTTTAAGCGTGGACACTTTGATCAAGCTGCAAAGTCATATGAGAAGGTTTGTGCACTGTATTCTGGTGAAGGATGGCAGGACCTGTTGGCTGAGGTCCTTCCCTATTTAGCTGAGTGTCAGAAGATACTTGATGATCAAGCAGGCTACTTACTATCCTGTGTGAGGTTACTTTCTCTTGATGAAGAATTATTTTCGACCAAGGAGCGTCAAGCTTTTCAGTCAGAAGTGCTCCGTCTTGCTCATAGTGAAATGAAGAACCCTGTACCTCTTGATGTATCATCATTAATTACATTTTCAGGAAATCCAGGGCCTCCATTGGAGTTATGTGATAGGGATCCTGGTATCCTTTCTGTAACTGTTTGGAGTGGTTTTCCAGATGATATAACTCTTGATTCAATCAGTCTTACATTAATGGCAACAAATAACGCTGATGAAGGTGTAAAGGCATTGAAGAGTTCTACAGCTATTGTGTTACAGCCTGGTCGGAATACTATTACCTTAGATCTACCACCTCACAAACCAGGATCCTATGTTCTTGGAGTTCTTACTGGGCAGATTGGGCAGCTGAGGTTTAGATCTCATAGTTTTTCAAAAATTGGTCCTGCAGATAGCGATGATTTTATGAGTTATGAAAAGCCAGCTAAACCTATTTTGAAGGTTTTCAAGCCTAGAGCCCTTGTTGATCTTGAAGCTGCTGTTTCATCTGCTTTGTTAATAAATGAACACCAATGGCTTGGCATTTTAGTTCGACCTTTAAATTACTCCCTCAGAGCTGCTGTCTTGCATATTGATACTGGTCCAGGGTTGGAGATTGAAAAGTCACACATAATTGAGATGGAAAGCTGTGCTTGCGTATCACAGAATGATGATGGCCAGGGTGGTGCTCAAGTAGATTCTTTAAATTATGAGAAAAGATTTGAACGTTTGACTCTTGATGATGGTAAAGTAGTGTTTCCCAATTGGGCAAGTGACACTCCTTCTGTTCTTTGGGTTCTGATTCGTGCCATCAGTGATACGCTCTGCAGAGGATCATCTTCAGGCACAACAAGGAGAGAGAGTATTGTAGATGGAATGAGAACAATAGCTCTGAAACTGGAATTTGGAGCATTCCACAATCAGACATTTGAAAGGACCCTAGCAGTGCATTTTACGTATCCTTTCTATGTAAGGACACGTGTTACTGATAAATGCAATGATGGTACCCTGCTTCTGCAGGTAATACTTCACTCTGAAGTAAAGGCTACATTGACCGTATATGATGCTTGGCTTGATCTTCAAGATGGATTTATTCATACTGGACAAACTGATGGTAGACCTAATTCAAGCTTCTTCCCACTAATCATATCTCCCACTTCCAAAGCAGGAATTTTGTTTAGTATCTGCCTAGGCAAAACAAATGCAGAAGAAGAAGCTACGAAGCAACCAGAAAGCATATTAAATATCAAATATGGAATTTCTGGTGATAGAACATCAGGAGCCCATCGTCCTTTCTTGAATGAATCTACTGGAGTTGATGGTGTCAGACAGGAGTTGATCTTCAAGACTGCAATTACTTTGCAAAGGCCTGTTCTTGATCCGTGCATAGCCGTTGGTTTTCTTCCTCTCCCTTCAGATGGCCTAAGAGTTGGACAACTGGTTAAAATGCAATGGAGGGTGGAAAGATTAAAATATTTGGATGAGAAAGAAGTCTCCCAACAGAGTGATGAGGTGCTTTACGAGGTAAATGCAAATTCCGGAAATTGGATGATAGCTGGGAGGAAAAGAGGACATGTGTCTCTCTCCATAAAACAGGGTGCACGGATCATTATCTCAGTATTATGCATGCCACTGGTGGCTGGTTATGTTCGTCCTCCTCTACTTGGGCTACCAGATGTTGATGAGGCAAATATAAGATGCAAACCTGCTGGGCCACATCTGATTTGTGTTTTGCCTCCAGCTCTGAGCTCATCCTTCTGCATTCCAGTTGATTCATGA	3768	0.4275	MANFLAQFQTIKNSSDRLVISVEDVSDLWPTVKPAFEARLPFKKASLNNKTRNPVLVETLPAEFILTTDSRLRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLKLIVQNDEREWFIVFVSKAHPANDQASKMAKKVYAKLEVEFSSKKRERCCKYDMHFPEANFWEDLESKITECIRNTLDRRVQFYEDEIRKLSEQRLMPVWNFCNFFILKESLAFIFEMGHLHEDALREYDELELCYLETVNMSGKQRDFGGGERGDDQAAVLNPGNKALTQIVQEDSFREFEFRQYLFACQSKLLFKLNRPIEVASRGYSFIISFSKSLALHERILPFCMREVWVITACLALVEATTSNYNDGLMVPDIEKEFFRLLGDLYSLGRVKFMRLAYLVGYGTEIERSPVNSASLSLLPWPKPAVWPSVPADASSEVLDKEKLILQTTPRAKHFGIQRKPLPLEPTVLLREANRRRASLSAGNVFEIFDSRQGPVEGSGFDASSRMSPQKVHASSMSRTNSSPGNFDGSIDRPMRLAEIYVATEHALKQTISNQELLKSLSSSEEFEQKYLELTKGAADNYHRSWWKRHGVVLDGEIAAVAFKRGHFDQAAKSYEKVCALYSGEGWQDLLAEVLPYLAECQKILDDQAGYLLSCVRLLSLDEELFSTKERQAFQSEVLRLAHSEMKNPVPLDVSSLITFSGNPGPPLELCDRDPGILSVTVWSGFPDDITLDSISLTLMATNNADEGVKALKSSTAIVLQPGRNTITLDLPPHKPGSYVLGVLTGQIGQLRFRSHSFSKIGPADSDDFMSYEKPAKPILKVFKPRALVDLEAAVSSALLINEHQWLGILVRPLNYSLRAAVLHIDTGPGLEIEKSHIIEMESCACVSQNDDGQGGAQVDSLNYEKRFERLTLDDGKVVFPNWASDTPSVLWVLIRAISDTLCRGSSSGTTRRESIVDGMRTIALKLEFGAFHNQTFERTLAVHFTYPFYVRTRVTDKCNDGTLLLQVILHSEVKATLTVYDAWLDLQDGFIHTGQTDGRPNSSFFPLIISPTSKAGILFSICLGKTNAEEEATKQPESILNIKYGISGDRTSGAHRPFLNESTGVDGVRQELIFKTAITLQRPVLDPCIAVGFLPLPSDGLRVGQLVKMQWRVERLKYLDEKEVSQQSDEVLYEVNANSGNWMIAGRKRGHVSLSIKQGARIIISVLCMPLVAGYVRPPLLGLPDVDEANIRCKPAGPHLICVLPPALSSSFCIPVDS*	1256

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g4497	1255	PANTHER	EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1	1	1253	IPR045126	GO:0048193\|GO:1990071
	Lja3g4497	1255	Pfam	Trafficking protein particle complex subunit 10, TRAPPC10	1137	1214	IPR022233	-
	Lja3g4497	1255	PANTHER	BNAC09G30770D PROTEIN	1	1253	-	-
	Lja3g4497	1255	Coils	Coil	185	205	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja3g4497	K20307		-	gmx:100787264	2245.31

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja3g4497	3	86727232	86742815	Lja3g4497	3	86727232	86742815	ECH