Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4413 ATGGGTACAAAGAGGGATTTTCCAATGATGAATGTTTTGTTTGAATGGTTGAGGAAGGGATCTAAGAGAGTGAAGATCATTTTGGGGGCATTGCTTTTGGTTTTTGCGATTGTGGCTCTAAAGTTCACTATCTATAATCCGTTGCATTTCTACATAGCCTCTCGAGTAATTCATTTTGCTGGGATTGTTGTTCTTATACAGAAGCTCTTTTCCCGCAAGACCTGCTCTGGATTATCAGTTAAGACCCAAGAGATCACAGCTTTATCCCTATTATCGAGATTAAACTTTAGGTTGTTGATGGTGGGTAGCATCTACGTTGTGCTAGATTTCATATCTCTCGTGGCTACGTTACTTGTTATATGGGCAATGAGGTTCAAGTTGAAGTCATCCTATGTCAAAGAGCTTGATACCTTGAGACGATCGTTTGTGGTGGTTCCTTGTGCAATCCTTGCGATCCTAATCCACCCTTATACAATTCATTCTCGCTTAAATCGAATCTCTTGGGCATTCGGCACGTATTTAGAAGCTATTTCAGTTCTTCCTCAACTTCATTATTTGCAAAATGCAAAGATGGTTGAAACATTTACGGGATATTATGTATTTGCTCTTGGGGTTTCAAGATTCTTCCTATTTGCTCATTGGCTTATTCAGAGTTATGAGAATCCAAGGTTATATTTTCTTCTAGTTGAGAATGGCAACGTGTGGCTCATTCTAGCTCTTTTGTCAGAGTTGGTTCAAACATTCATCTTGGCAGACTTTTGTTACTATTACATGAAAAGCTTTATACAAGGACAACTTCTAAGGAAAATGCCTATTTAA 819 0.3846 MGTKRDFPMMNVLFEWLRKGSKRVKIILGALLLVFAIVALKFTIYNPLHFYIASRVIHFAGIVVLIQKLFSRKTCSGLSVKTQEITALSLLSRLNFRLLMVGSIYVVLDFISLVATLLVIWAMRFKLKSSYVKELDTLRRSFVVVPCAILAILIHPYTIHSRLNRISWAFGTYLEAISVLPQLHYLQNAKMVETFTGYYVFALGVSRFFLFAHWLIQSYENPRLYFLLVENGNVWLILALLSELVQTFILADFCYYYMKSFIQGQLLRKMPI* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4413 272 PRINTS ER lumen protein retaining receptor signature 190 204 IPR000133 GO:0006621|GO:0016021|GO:0046923
Lja3g4413 272 PRINTS ER lumen protein retaining receptor signature 204 222 IPR000133 GO:0006621|GO:0016021|GO:0046923
Lja3g4413 272 PRINTS ER lumen protein retaining receptor signature 50 69 IPR000133 GO:0006621|GO:0016021|GO:0046923
Lja3g4413 272 PRINTS ER lumen protein retaining receptor signature 168 188 IPR000133 GO:0006621|GO:0016021|GO:0046923
Lja3g4413 272 PRINTS ER lumen protein retaining receptor signature 77 97 IPR000133 GO:0006621|GO:0016021|GO:0046923
Lja3g4413 272 PANTHER ER LUMEN PROTEIN-RETAINING RECEPTOR C28H8.4-RELATED 5 271 - -
Lja3g4413 272 PANTHER ER LUMEN PROTEIN RETAINING RECEPTOR 5 271 IPR000133 GO:0006621|GO:0016021|GO:0046923
Lja3g4413 272 Pfam ER lumen protein retaining receptor 74 216 IPR000133 GO:0006621|GO:0016021|GO:0046923
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4413 Lja-Chr3 85447568 85451729 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4413 1 272 Miscellaneous Gene Families AT3G25160 53.676 7.22e-100 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4413 - K10949 gmx:100790733 340.887