Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4412 ATGGGAACAAAGGGGGATTCTCCAATCATGAATGTGTTGATTGGATGGTTGAGGAAGCGGTCTAAGAGAGTGAAGATCATTTTGGGGGCATTGCTTTTTATTTTTGCGCTGTTGGCTCTGAAGTTCACTGTTGAAGATACAGTCCATCTCTACTTAGTCTCTCGAATAATTCATTTAGCAGGGATTATTGTTCTCATACACAAGCTCTTTTACCGCAAGACCTGCTCTGGTTTATCACTTAAGACCCAAGAGATCACAGCTTTATACCTAGCTTCAAGAATAGGTTTGAGCTATTTGATGGTGGGAAACATCCACACTGTGCTAGATTTCATAACTCTTGTGTCCACATTACTTGTTATATGGGCGATAAGATTCAGGTTTAAGTCATCCTATGTCAAAGAGCTTGATAGCCTGAAACGATCATTAGTGGTGGTTCCTTGTGCAATCCTTGCAGTCCTAATCCACCCATATACACCTCATCCTCGCTTATCTCGAATCTCATGGGCATTTAGTGGGTATTTGGAAGCTGTTTCAGTTCTTCCTCAACTTCACTTTCTGCAAAATGCAAAGTGTTATGAGAATCCAAGGTCATATCTTCGTCTTGTTGAGAATGGAAGCTTATGGCTCATCATATCTCTTTTGTCCGAGTTGGTTCAAACATTCATCTTGGCAGACTTTTGTTACTATTACATGAAAAGCTTCATACAAGGACAACTTTTAAGGAAAATGCCTATTTAA 738 0.3984 MGTKGDSPIMNVLIGWLRKRSKRVKIILGALLFIFALLALKFTVEDTVHLYLVSRIIHLAGIIVLIHKLFYRKTCSGLSLKTQEITALYLASRIGLSYLMVGNIHTVLDFITLVSTLLVIWAIRFRFKSSYVKELDSLKRSLVVVPCAILAVLIHPYTPHPRLSRISWAFSGYLEAVSVLPQLHFLQNAKCYENPRSYLRLVENGSLWLIISLLSELVQTFILADFCYYYMKSFIQGQLLRKMPI* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4412 245 Pfam ER lumen protein retaining receptor 74 194 IPR000133 GO:0006621|GO:0016021|GO:0046923
Lja3g4412 245 PANTHER ER LUMEN PROTEIN RETAINING RECEPTOR 3 192 IPR000133 GO:0006621|GO:0016021|GO:0046923
Lja3g4412 245 PANTHER ER LUMEN PROTEIN-RETAINING RECEPTOR C28H8.4-RELATED 3 192 - -
Lja3g4412 245 PRINTS ER lumen protein retaining receptor signature 77 97 IPR000133 GO:0006621|GO:0016021|GO:0046923
Lja3g4412 245 PRINTS ER lumen protein retaining receptor signature 168 188 IPR000133 GO:0006621|GO:0016021|GO:0046923
Lja3g4412 245 PRINTS ER lumen protein retaining receptor signature 50 69 IPR000133 GO:0006621|GO:0016021|GO:0046923
Lja3g4412 245 PANTHER ER LUMEN PROTEIN RETAINING RECEPTOR 192 244 IPR000133 GO:0006621|GO:0016021|GO:0046923
Lja3g4412 245 PANTHER ER LUMEN PROTEIN-RETAINING RECEPTOR C28H8.4-RELATED 192 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4412 Lja-Chr3 85415090 85445081 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4412 1 245 Miscellaneous Gene Families AT3G25160 47.426 5.40e-81 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4412 - K10949 gmx:100790733 267.314