Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3835 ATGTGGAGAGATCCAGGAGCTCCGGCAGATTCTTTCTATGAAATCCGCCCTGAGTGCACAGATGTTCCCAAGTCAAGATTTAGGATAAAGGCTGGTAAAACTCTAAGTGCAAGAAAGTGGCATGCTGCATTTTCTCCCGAAGGGTATTTGGATATAGGCAAGACTCTAAGCCGAATCCACCGTGGGGGAATTCACCCATCAATTAGAGGAGAAGTTTGGGAATTTCTACTCGGTTGCTATGATCCAAAGAGTACATTTGAGGAAAGAGATGAGATAAGGCAGCGCCGAAGGACGCAATATGCTGAATGGAAGGAAGAATGCCGCCAATTGTTTCCTCTTGTGGGAAGTGGGAGATTTATCACTGCACCGGTGGTTACTGAAGATGGTCAACCAATTCAAGATCCATTGGTTCTATTAGAAAATAATCCAGACGGTGGAGCGATTGTACCTCCTCAAACTCCTCAAGATAATAATGGTATGGGACCTCCCAGCACTGACGCTGCAAATAAATTAGAGAAGATGACAGACAAAGGAGTAATCCAATGGATGTTAACTCTGCATCAAATAGGTCTTGACGTGATTCGCACTGATAGGACACTAGTGTTTTATGAGAAGAAAGAGAACTTGTCAAAACTATGGGATATTCTTGCAGTTTATGCTCGGATAGATACAGATGTTGGCTATTGTCAAGGAATGAGTGACTTATGTTCTCCCATGATAATTCTTCTGAATGATGAAGCTGACGCGTTTTGGTGCTTTGAGCGTCTGATGCGTAGACTGCGAGGAAATTTCAGATGCACTGATAGTTCTGTTGGGGTGGAGGCTCAACTGAGTAATTTAGCTTCAATTACTCAAGTAATTGATCCAAAACTTCATCAACATTTAGAGCATCTTGGTGGAGGTGACTATCTGTTTGCTTTTCGAATGCTAATGGTTCTGTTTCGTCGAGAATTCTCCTTTTGCGATTCATTGTACCTTTGGGAGATGATGTGGGCTCTAGAGTATGATCCTGACATGTTCTGGTTGTACGAAGATGCTGAAGAAACTTCTGATAAGTCTGAGGAAGCGAAAGCGAGATTAAAGTCAATACGCCATTACGGAAAGTATGAGAGAGAAAATATGAAAAATGCATCAAAGAGTTCTGAAGAACCTCCTCTTCCCATATCTGTTTTCCTTGTTGCTAGTGTGTTGAAAGAGAAAAGCGCAACACTACTCCAGCAAGCACGAGGCTTGGATGACGTTGTCAAGATATTGAATGATGTAAATGGAAATCTAGATGCCAAAAAAGCCTGCGTTGCGGCACTGAAACTTCACAAGAAATATTTGAAGAAGGCCAAGAAACCCTAG 1347 0.4232 MWRDPGAPADSFYEIRPECTDVPKSRFRIKAGKTLSARKWHAAFSPEGYLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYDPKSTFEERDEIRQRRRTQYAEWKEECRQLFPLVGSGRFITAPVVTEDGQPIQDPLVLLENNPDGGAIVPPQTPQDNNGMGPPSTDAANKLEKMTDKGVIQWMLTLHQIGLDVIRTDRTLVFYEKKENLSKLWDILAVYARIDTDVGYCQGMSDLCSPMIILLNDEADAFWCFERLMRRLRGNFRCTDSSVGVEAQLSNLASITQVIDPKLHQHLEHLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPDMFWLYEDAEETSDKSEEAKARLKSIRHYGKYERENMKNASKSSEEPPLPISVFLVASVLKEKSATLLQQARGLDDVVKILNDVNGNLDAKKACVAALKLHKKYLKKAKKP* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3835 448 Gene3D - 270 447 - -
Lja3g3835 448 SMART tbc_4 60 354 IPR000195 -
Lja3g3835 448 PANTHER RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATED 1 448 - -
Lja3g3835 448 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 272 441 IPR035969 -
Lja3g3835 448 Coils Coil 343 363 - -
Lja3g3835 448 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 165 264 - -
Lja3g3835 448 ProSiteProfiles TBC/rab GAP domain profile. 63 334 IPR000195 -
Lja3g3835 448 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 1 448 - -
Lja3g3835 448 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 39 294 IPR035969 -
Lja3g3835 448 Pfam Rab-GTPase-TBC domain 179 332 IPR000195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3835 Lja-Chr3 75499923 75505871 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3835 - - gmx:100782079 771.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3835 3 75499923 75505871 Lja3g3835 3 75499923 75505871 ECH