Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3828 ATGGGGAGCAATAGCATGTTTCGCTATGCTGATGGGGTGGATAAGTTATTGATGTTTTTTGGGACCCTGGGAAGCCTTGGAGATGGACTGCAGAACCCTCTCATGATGTATGTTCTCAGTGATGTGATCAACGCCTATGGAGACAAGAATAGCATTTTGACAAAGCATATTGTAAACGAGTATGCATTCAGGCTTTTATGTGTTGCAGTTGGAGTTGGGATTTCTGCTTTTATAGAAGGAGTATGTTGGACAAGAACAGCAGAGAGACAGGCTTCCAAAATGAGAATGGAATACCTAAAATCAGTCCTAAGACAAGAAGTTGGTTACTTTGACACCCAGACTGATGGTTCTTCAAAAACCTACCAAGTTGTCTCACTCATCTCCTCAGATGCAAATACCATCCAAGTTGCCTTGAGTGAGAAGATACCTGACTGCCTGGCTTACATGTCAACATTCTTATTCTGCCACATCTTTGCATTTGTACTTTCATGGAGACTTACACTGGCAGCTATACCACTCTCTTTCATGTTCATTGTTCCAGCACTTATGTTTGGAAAGATTATGCTGGATGTCACAATGAAAATGATTGAGTCTTATGGGGTTGCTGGTGGCATTGCAGAACAAGCAATATCTTCAATAAGAACAGTTTATTCTTATGTTGGGGAGAACCAAACACTGATCAGGTTCAGCAGTGCACTTCAAAAAACTTTGGAATTTGGAATAAAGCAAGGTTTTGCCAAGGGCTTGATGTTAGGAAGCATGGGAGTTATTTATATAAGTTGGGGGTTTCAGGCTTGGGTTGGAACTTATCTGATCACTGAAAAAGGAGAACAAGGTGGCCATGTGTTTGTAGCTGGCTTCAATGTCCTCATGGGAGGACTGAGCATTTTAAGTGCCCTTCCAAATTTGACAGCCATCACAGAGGCAACTTCTGCCATCACTCGCCTCTATGAAATGATTGATAGGGTGCCAGATATAGATTCTGAAGACAAGAAAGGAAAGGCTTTATCACATGTGAGAGGAGAAATTGTATTTAAAGACATCTATTTCTGCTACCCATCTAGGCCAGATTCACCAGTCTTGCAAGGATTTAATCTCACTGTTCCAGCAGGCAAGAGTATAGGCCTTGTGGGGGGTAGTGGTTCAGGAAAATCCACTACAATTGCACTGCTTGAAAGGTTTTATGACCCTGTTGAAGGAGAAATACTCTTGGATGGCCACAAGATTAATAGACTTCAATTGAAATGGTTGAGATCCCATTTTGGCTTAGTAAATCAAGAGCCAGTTCTTTTTGCCACATCAATAATGGAGAATATAATGTTTGGAAAAGAAGGAGCTTCAATGGAAAGTGTAATAGATGCAGCTAAAGCAGCAAATGCACATGATTTCATCGTCAAGTTACCGGATGGATATGAAACTCAAGTGGGACAGTTTGGGTTTCAATTGTCTGGTGGGCAGAAGCAGAGGATTGCAATAGCAAGAGCTTTAATTAGGGATCCAAAGGTTCTCCTACTTGATGAAGCAACCAGTGCATTGGATTCTCAGTCTGAAAGAGTGGTACAGGCAGCTCTTGATCAAGCTTCAAAAGGAAGGACAACAATCATCATCGCTCACCGCTTGTCGACAATAAGATCAGCCAACCTCATTGCAGTCCTTCAAGCAGGAAGAGTGATTGAATCAGGCACTCATAATGAGCTCATGGAAATGAATGGTGGGGAGTATGCTAGAATGGTAGAGTTGCAGCAAGGAACAGCAACTCAAAATGATGAATCCAAACTTTCCAATCTTCAAATAGAAGGAAACAAGAGCTTCCACTCTCACAGGATGAGCATTCCTCAAAGTCCAGGAGTGAGTTTCAGATCAAGTGCAACAATAGGCACTCCAATGTTATATCCCTTCAGCCAGGGATTTTCCATGGGGACACCTTACTCCTACTCCATCCAATATGACCCTGATGATGATAGTTTTGAAGATAACAACATGAAAAGATCAAATTATCCAGCTCCTTCGCAGTGGCGTTTAATGAAAATGAATGCACCTGAATGGGGAAGAGCTGTGCTAGGACTCTTGGGAGCATTAGGCTCAGGAGCAGTACAACCTGTGAATGCATACTGTGTGGGAATACTAATATCAGTTTATTTTAACCCTGATAGCTCTGAGATGAAGTCTAAAGCTAGAACCTTAGCCCTCATTTTTTTAGGAATTGGTGTTTTCAACTTCTTCACTAGTATACTCCAACACTACAATTTTGCAGTGATGGGAGAGAGGTTGACTAAAAGAATAAGAGAGAAAATACTTGCAAAATTGATGACTTTTGAGATAGGATGGTTTGATGATGAAGAGAACACAAGTGCATCCATTTGTGCAAGGTTATCCTCTGAAGCCAACTTGGTTCGCTCCCTTGTCGGCGACCGGATGTCTTTGCTTGCGCAAGCAGTATTTGGATCTGTATTTGCCTACACTGTTGGAATTGTTCTCACATGGAGGCTTTCCCTTGTCATGATTTCAGTGCAGCCGCTAGTCATTGGAAGCTTTTACTCAAGAAGTGTCTTGATGAAGACCATGGCAGAGAAAACGCGAAAAGCGCAAAGGGAAGGAAGCCAGCTTGCAAGTGAAGCTGTCATAAACCACAGAACCATAACTGCCTTCAGTTCTCAGAAAAGAATGCAGGCACTCTTCAAATCCACAATGGTAGGACCTAAAATGGAAAATATCAGGCAGTCATGGATTTCAGGCTTTGGTCTTTTCAGCTCCCAATTTTTCAACACTGCATCATCAGCATTGGCTTTCTGGTATGGTGGGAGGCTCCTTGTAGAAGGGCTTATAGAACCAAAGGAACTCTTCCAAGCATTTCTAATATTGCTCTTCACTGCATACATCATTGCAGAAGCTGGAAGCATGACTTCTGACATATCTAAAGGAAGCAATGCAGTTGGATCAGTTTTCGCTATCTTGGACAGGAAAAGTGAGATTGATCCTGAGACTGCTTGGGGAGGAGATAAGAGAAGGAAGATAAGAGGCAGGGTGGAGCTGAAAAGTGTGTTCTTTTCTTATCCAACTAGACCTGACCAAATGATATTCCAGGGTCTGAATCTCAAGGTTGAGGCTGGGATAACAGTGGCACTGGTGGGGCACAGTGGTTGTGGTAAATCAACCATCATTGGTCTAATTGAAAGGTTTTATGATCCTTTGAAGGGAACGGTATGCATAGATGAACAAGACGTCAAGTCCTATAATTTGAGAATGCTGAGGACACACATTGCATTGGTGAGTCAGGAGCCAACACTTTTCAGTGGAACCATTAGAGAAAACATTGCCTATGGGAAAGAAAATGCAACTGAATCTGAGATTAAAAGGGCTGCAACTCTGGCTAATGCTCATGAATTCATAAGTGGAATGAATGATGGATATGACACATACTGTGGAGAAAGAGGAGTTCAACTTTCAGGAGGTCAGAAACAAAGAATAGCCATAGCTCGAGCCATACTGAAGAATCCTGCAATTCTTCTTCTCGATGAGGCAACAAGTGCACTTGACAGTGCCTCAGAGATCTTGGTCCAAGAAGCACTTGAGAAGATAATGGTTGGAAGAACATGCATAGCAGTGGCACACAGGCTATCCACAATACAGAAATCAAACTCCATTGCTGTGATTAAGAATGGGAAGGTTGTGGAACAAGGTTCACATAATGAATTGATTTCCCTTGGACGTAATGGAGCATATCATTCTCTTGTTAAACTTCAACATGATAGCTCCCCCCCTAGATGA 3768 0.422 MGSNSMFRYADGVDKLLMFFGTLGSLGDGLQNPLMMYVLSDVINAYGDKNSILTKHIVNEYAFRLLCVAVGVGISAFIEGVCWTRTAERQASKMRMEYLKSVLRQEVGYFDTQTDGSSKTYQVVSLISSDANTIQVALSEKIPDCLAYMSTFLFCHIFAFVLSWRLTLAAIPLSFMFIVPALMFGKIMLDVTMKMIESYGVAGGIAEQAISSIRTVYSYVGENQTLIRFSSALQKTLEFGIKQGFAKGLMLGSMGVIYISWGFQAWVGTYLITEKGEQGGHVFVAGFNVLMGGLSILSALPNLTAITEATSAITRLYEMIDRVPDIDSEDKKGKALSHVRGEIVFKDIYFCYPSRPDSPVLQGFNLTVPAGKSIGLVGGSGSGKSTTIALLERFYDPVEGEILLDGHKINRLQLKWLRSHFGLVNQEPVLFATSIMENIMFGKEGASMESVIDAAKAANAHDFIVKLPDGYETQVGQFGFQLSGGQKQRIAIARALIRDPKVLLLDEATSALDSQSERVVQAALDQASKGRTTIIIAHRLSTIRSANLIAVLQAGRVIESGTHNELMEMNGGEYARMVELQQGTATQNDESKLSNLQIEGNKSFHSHRMSIPQSPGVSFRSSATIGTPMLYPFSQGFSMGTPYSYSIQYDPDDDSFEDNNMKRSNYPAPSQWRLMKMNAPEWGRAVLGLLGALGSGAVQPVNAYCVGILISVYFNPDSSEMKSKARTLALIFLGIGVFNFFTSILQHYNFAVMGERLTKRIREKILAKLMTFEIGWFDDEENTSASICARLSSEANLVRSLVGDRMSLLAQAVFGSVFAYTVGIVLTWRLSLVMISVQPLVIGSFYSRSVLMKTMAEKTRKAQREGSQLASEAVINHRTITAFSSQKRMQALFKSTMVGPKMENIRQSWISGFGLFSSQFFNTASSALAFWYGGRLLVEGLIEPKELFQAFLILLFTAYIIAEAGSMTSDISKGSNAVGSVFAILDRKSEIDPETAWGGDKRRKIRGRVELKSVFFSYPTRPDQMIFQGLNLKVEAGITVALVGHSGCGKSTIIGLIERFYDPLKGTVCIDEQDVKSYNLRMLRTHIALVSQEPTLFSGTIRENIAYGKENATESEIKRAATLANAHEFISGMNDGYDTYCGERGVQLSGGQKQRIAIARAILKNPAILLLDEATSALDSASEILVQEALEKIMVGRTCIAVAHRLSTIQKSNSIAVIKNGKVVEQGSHNELISLGRNGAYHSLVKLQHDSSPPR* 1256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3828 1255 SMART AAA_5 370 562 IPR003593 -
Lja3g3828 1255 SMART AAA_5 1036 1228 IPR003593 -
Lja3g3828 1255 Pfam ABC transporter 1028 1176 IPR003439 GO:0005524
Lja3g3828 1255 ProSitePatterns ABC transporters family signature. 482 496 IPR017871 GO:0005524
Lja3g3828 1255 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 686 973 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja3g3828 1255 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 10 1249 - -
Lja3g3828 1255 CDD ABC_MTABC3_MDL1_MDL2 1009 1248 - -
Lja3g3828 1255 CDD ABC_6TM_Pgp_ABCB1_D2_like 675 991 - -
Lja3g3828 1255 SUPERFAMILY ABC transporter transmembrane region 7 325 IPR036640 GO:0005524|GO:0016021
Lja3g3828 1255 Pfam ABC transporter transmembrane region 18 293 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja3g3828 1255 Pfam ABC transporter transmembrane region 687 958 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja3g3828 1255 Gene3D ABC transporter type 1, transmembrane domain 653 996 IPR036640 GO:0005524|GO:0016021
Lja3g3828 1255 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 343 579 IPR003439 GO:0005524
Lja3g3828 1255 SUPERFAMILY ABC transporter transmembrane region 672 992 IPR036640 GO:0005524|GO:0016021
Lja3g3828 1255 ProSitePatterns ABC transporters family signature. 1148 1162 IPR017871 GO:0005524
Lja3g3828 1255 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 19 308 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja3g3828 1255 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 10 1249 IPR039421 -
Lja3g3828 1255 CDD ABC_MTABC3_MDL1_MDL2 343 581 - -
Lja3g3828 1255 CDD ABC_6TM_Pgp_ABCB1_D1_like 18 316 - -
Lja3g3828 1255 Gene3D - 333 582 IPR027417 -
Lja3g3828 1255 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 334 581 IPR027417 -
Lja3g3828 1255 Gene3D ABC transporter type 1, transmembrane domain 5 600 IPR036640 GO:0005524|GO:0016021
Lja3g3828 1255 Pfam ABC transporter 361 510 IPR003439 GO:0005524
Lja3g3828 1255 Gene3D - 999 1253 IPR027417 -
Lja3g3828 1255 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1004 1248 IPR027417 -
Lja3g3828 1255 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1009 1245 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3828 Lja-Chr3 75426263 75439488 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3828 3 587 Calmodulin-binding Proteins AT2G36910 35.786 1.38e-104 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3828 K05658 - gmx:100788127 2176.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3828 3 75426263 75439488 Lja3g3828 3 75426263 75439488 ECH