Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3827 ATGCGCGTTCGAAAACTATGCACTCTCAGCTCCTATTTCCGTTCAAATTTACACCGCAAACCCAAATTCGAACTCGCCATTTCCAATATAGTCTCTTCTCCTGAACCCCATCACGATTCCACTTCAGACTTTCAACTCTCAACTCTCAAACTCCACCGTGCTTCTACCCCAGAGGATTCGTCTGATTCGGATGTTGCGACGACTCAGCTTGCATCTATTATATTGCCTTCGCCTCCGGTAAAGAAGCTTGTTTCTGAGGAAAATGGTAAAGAAGAAAAAGACAGAAGAATACTAGAGATACCATGGGTACCGGATGTTCCTAGTGGGGATATTTCAGTTAAGCGGAAGGAGGTATCTCGTGAGAGGAAACAAAAATGGGTATTTAAATACAGTAACGAGGACCGTTCTGACAGGTTACTTGGTATGTGCGCGAAAAGACTAGGATCTAAAGCTACTGTTGAGGTGTTTGGCCATCTGGGTCGGGAAACAGGTCTGAAAGAGTACAATAAGTTGATACAATTGTGTGTAAAGAAGGCTAGGGGAGCTGATGATGAAGACATTGCTATAGAAGAATTGAGTAAGGCTTTTCACCTTCTCAAATTAATGAGGGAATATGGTTTCCCACTAGGAGAGCAAACATACCGCCCAATTCTTCAGTATCTAATTGACTTGGGTATGGTTCGAGAATTTGAACTTTTCTCTGATGTTATCAAAGCTGAGAATGCCAGTTCGACTTCACGGTTGGGTTACTATGAAATGATGCTGTGGTTAGGAGTTAACCATGAAGAAATGATCCGGGATATTTGTGAATATATTACAGTTGAAGACAGTGAAGACACTACTGCTTTACGAGAAAGTTACTTATTGGCTCTTTGTGAAAGTGATCGAAAGACGCAGATTTTGGATGTGTTGAAAAATATAGACATAACAAAGCTTACATCTGTGGAATCTAGATCGAATATATTCCAAGCCTTAGGAAGGCTACAGCTGGAATCTGATGCAGAGAATTTACTGTTGGATTTGAGAGCAAGCGATCAAGATCCGGATGATATTTCAAACTTCATTGCTAGTTTTGCTGTTAGCATTCCAAATTTAGCGGCTGAAGATATAATCGTGAAAGTCGAGAATTTGCATGAAGTATTGGATGTTTTGCCTTCAATGTCATCGTATAAAAAGCTTATTCAGTATTGTTGTGGCTTACTAAAGGTGGATACAGCCGTTGATATTGTTGATAAAATGTGTGAAGCAGGCTTTACGTTGTCTACTCAGGTGTTACAATCCATATTACACATTTGTGAGGAAACTTATGATTATATTTTGGTTCATCGAATCTATTCCATCATATGTCGCCACCATTTGGGGTTGAATAATGAAATATGCAGGAGTTTGGTCTACTTTTTTGTGAGGTTAAAAGATTTTAAAGGTGCGTACAAGATGATTGAGGACTTGCAGAAAATGAATTTTATACCTACTGCAGCCATGTACAATGCTATAATGGGAGGATACTTTCGGGAGAAAAACATCAGTGGTGGGCTGAGTGTCCTCAAACATATGCGAGAGGCCAATGTAAAACCTGATTCACAGACTTTCAGCTATTTGATTACCAATTGTCAAAGTGAAGAGGATATAATCAAGTATTATGAAGAATTGAAGCTATCAGGAATCCAAGCTACAAAGCAAATTTTTATGGCGCTTATTAATGCATATGCAGCTTGTGGCGAATTTGAGAAGGCAAAACAGGTAGTTTTAGATTCAGAAGTACCACACAAGTACTTACATGAAATAAAGAGTGTGCTTATCTCCGCTCTTGCATCACACAAGCAATTGCCCGAGGCGCTTCTTATATACGAGGAGGTCAAGAAGGCCGGACTTGGTGTGGAGCCAAAAGCTGTTATAAGTCTCATTGAAGAATTGACTCAATTAAGTGGAGAGTTGGATGGGTTGCTTCTTCTACTCAAGGAATTGAGTGATCTAGACTATTGGGTTGATGGTTGCTTCAGGGTTATCAAGTATTGTGTTCAGAACAATCATTTAAGTTCTGCTATTGTGCTGTTCAAACAACTCAAGGATAAGTTCGAAAGTGATGAAATACAATTGGAAGTTCTATTTGACTCTGTATTTTCTGTAATTGCGTCGTCCAAGTCCACACATCTACAGTTTGGCCTCGACTTGCTTTGGGCAATCAAGGATGAGATTGGCCTTATTCCTTCAAGGCAGAGTCTTGATTTTCTTCTAAGTGCTTGTGCCAATGCTGGAGATTTGAATAATGCTCGTTTGATTTGGAGAGAATATGAGGTTGCTGGATTTCCTTACAATGTATTAAGTTACTTGAGGATGTATCAGGCACTTTTAGCATCAGGAGATCATAGATCTGCCAACCTTATGCTCAAAAAAATTCCAAAAGATGATATGGAGGTCTGTTCTGTCATCTTATCTTGTCAAAACACGTACTCTGCTAATGACAATCTTAACTCTGTAGAAGTGAAGAAACCGAAAGGAAAGAAAAAGAAGAAAAAGAAGAAAAAGTGTAGTGTAGAGAGGTAG 2544 0.3939 MRVRKLCTLSSYFRSNLHRKPKFELAISNIVSSPEPHHDSTSDFQLSTLKLHRASTPEDSSDSDVATTQLASIILPSPPVKKLVSEENGKEEKDRRILEIPWVPDVPSGDISVKRKEVSRERKQKWVFKYSNEDRSDRLLGMCAKRLGSKATVEVFGHLGRETGLKEYNKLIQLCVKKARGADDEDIAIEELSKAFHLLKLMREYGFPLGEQTYRPILQYLIDLGMVREFELFSDVIKAENASSTSRLGYYEMMLWLGVNHEEMIRDICEYITVEDSEDTTALRESYLLALCESDRKTQILDVLKNIDITKLTSVESRSNIFQALGRLQLESDAENLLLDLRASDQDPDDISNFIASFAVSIPNLAAEDIIVKVENLHEVLDVLPSMSSYKKLIQYCCGLLKVDTAVDIVDKMCEAGFTLSTQVLQSILHICEETYDYILVHRIYSIICRHHLGLNNEICRSLVYFFVRLKDFKGAYKMIEDLQKMNFIPTAAMYNAIMGGYFREKNISGGLSVLKHMREANVKPDSQTFSYLITNCQSEEDIIKYYEELKLSGIQATKQIFMALINAYAACGEFEKAKQVVLDSEVPHKYLHEIKSVLISALASHKQLPEALLIYEEVKKAGLGVEPKAVISLIEELTQLSGELDGLLLLLKELSDLDYWVDGCFRVIKYCVQNNHLSSAIVLFKQLKDKFESDEIQLEVLFDSVFSVIASSKSTHLQFGLDLLWAIKDEIGLIPSRQSLDFLLSACANAGDLNNARLIWREYEVAGFPYNVLSYLRMYQALLASGDHRSANLMLKKIPKDDMEVCSVILSCQNTYSANDNLNSVEVKKPKGKKKKKKKKKCSVER* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3827 847 Gene3D Tetratricopeptide repeat domain 443 540 IPR011990 GO:0005515
Lja3g3827 847 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 491 525 IPR002885 -
Lja3g3827 847 MobiDBLite consensus disorder prediction 830 847 - -
Lja3g3827 847 MobiDBLite consensus disorder prediction 827 847 - -
Lja3g3827 847 Gene3D Tetratricopeptide repeat domain 541 664 IPR011990 GO:0005515
Lja3g3827 847 Gene3D Tetratricopeptide repeat domain 666 846 IPR011990 GO:0005515
Lja3g3827 847 Pfam Pentacotripeptide-repeat region of PRORP 388 534 IPR033443 -
Lja3g3827 847 Pfam PPR repeat 562 581 IPR002885 -
Lja3g3827 847 Pfam PPR repeat 597 624 IPR002885 -
Lja3g3827 847 Gene3D Tetratricopeptide repeat domain 133 442 IPR011990 GO:0005515
Lja3g3827 847 PANTHER OS02G0132600 PROTEIN 4 840 - -
Lja3g3827 847 TIGRFAM PPR: pentatricopeptide repeat domain 494 527 IPR002885 -
Lja3g3827 847 PANTHER OS02G0132600 PROTEIN 4 840 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3827 Lja-Chr3 75368516 75384220 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3827 364 655 Glycosyltransferase AT1G05670 18.495 2.81e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3827 - - cam:101502375 1177.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3827 3 75368516 75384220 Lja3g3827 3 75368516 75384220 ECH