Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3826 ATGGAGTCGATCCTCGCAAGAGCTCTGGAGTACACTCTCAAGTACTGGCTCAAATCATTCTCCAGAGACCAGTTCAAGTTGCAGGGTCGCACCGTCCAGCTCTCCAATTTAGATATTAATGGGGATGCATTGCATTCCAGCGTTGGATTTCCGCCGGCGCTCAATGTCGCCACTGCAAAAGTTGGCAAATTGGAGATCATGCTACCATCAGTGAGCAATGTACAGATAGAACCAATCATTGTGCAAATTGATAGGCTCGATTTGGTTCTTGAGGAGAATTCAGATTTTATACCATCTGAAAGTCCAACCAGTTCTACGTCATCAAGTGCCTCTGCCAAAGGTAGCGGGTATGGTTTTGCTGATAAGATTGCAGATGGAATGACTATACAGATTCATACAGTTAATCTATTACTTGAAACTCGTGGAAGTGCTCGTCGCCAAGGGGGAGCAACATGGGCACCACCCATGGCATCTATAACTATACACAACCTTTTGTTGTATACTACAAATGAAAGCTGGCAGGTTGTAAATCTTAAGGAAGCACGAGAATTCTCATGTAATAAGAAGTATATATATGTCTTCAAAAAACTGGAATGGGAATCACTGTCTATTGATCTTTTGCCTCATCCTGACATGTTCACGGATGCTACTTTAGGCCACTCTCAAGGGGGTGGAAACCTGAGAGATGATGATGGTGCAAAGCGAGTATTCTTTGGAGGTGAACGTTTTATAGAAGGAATATCAGGAGAAGCATATATCACAGTTCAGAGAACTGAATTGAACAGTCCACTTGGGCTGGAGGTTCAGTTACATGTCACAGAAGCTGTTTGTCCGGCACTAAGTGAGCCAGGACTGCGTGCACTTCTCCGCTTTATGACTGGATTGTGTGTTTGTCTAAACAGGGGAGATGTAGATTTCAAGGCCCAGCGGTCAACTGAAGCTGCTGGGCGCTCTCTTGTCTCAATTGTTGTGGACCATATATTTCTCTGCATTAAAGACTCTGAGTTCCAGCTTGAGCTTTTAATGCAGTCCCTCTTTTTTTCTCGGGCCAGTCTTCGTGAAGGAGATTCTGATTGTAACTTGACCAGGATTACTATTGCAGGACTATTTTTGAGGGATACCTTTTCACGGCCTCCATGTACCTTAGTGCAACCATCAATGCAGTCTGTCACAAGAGATGCTTTTGAAGTGCCAGAGTTTGCCAGAAGCTTTTGCCCTCCAATATATCCTCTAGGAGAACAGCAGTGGCAATCAATCGTGGGAACTCCAATAATATGTCTCCATTCCCTGCAGATCATGCCCTCTCCTCTTCCACCATCCCTTGCTTCTCAAACAGTTATTGACTGTCAGCCTCTTGCGATCCATCTCCAGGAAGAATCCTGCCTTAGGATATCATCTTTCTTAGCTGATGGTATTGTTATCAATCCTGGTGATATTTTGCCAGATTTCTCCGTAAAATCTTTTATTTTCACTCTCAAGGGACTGGATATTACAGTTCCTTTGGATAAGGGTCAATTGGATATTTCTAAAAGCTATATTGACAATACAGTCCAGTCCTCATTTGCTGGAGCAAGGCTTCATGTTGAAAACCTACTCTTTTTGGATTCACCCTCAATGAAGCTAAGGATACTCAATCTGGAGAAGGATCCTGCTTGCTTCTGTCTTTGGGAGGATCAGCCAATTGATGCTAGCCAGAAGAAATGGGCTGCCAGTGCATCCCATCTTACTTTATCTCTAGAAGCAAGTACCGGCACCCTTAGGCATCAGAATTCTCTCGGATGGACTGCTGGAATGTGGAGATGTGTCGATCTGAAAGATGCTTGCATTGAAGTAGCTATGGTAACTGCTGATGGTAGTCCATTGTTAAAGATTCCTCCTCCTGGAGGTATTGTTAGGGTTGGTGTTGCTTGTGAACAGTATCTATCCAATACTTCTGTTGAACAGTTATTTTTTGTCTTGGATCTCTATGCTTATTTCGGGAGAATTAGTGAGAAAATTGCAGCAGCTGGAAAAAGCAAACAATGGAATGACATGGGGAACAAATCTTTTAATGGAAAGCTGTTGGACAAGGTTCCTAGTGACACTGCTGTAAGTTTAGCAGTAAAAGACCTCCAACTTCGATTTCTTGAGTCTTCTTCAATGGATGTTGAGGGAATGCCTCTAGTACAGTTTGTTGGGGATGATCTGTTCATTAGTGCCACTCATAGAACCCTTGGTGGTGCTGTTGTCATTTCATCCACTTTATGTTGGGAGAGTGTTGAGATAGATTGTGTGGATTCTGAGGAATACTTGACATCTGAAAATGGCTCTTATTTTAGTTCGGGAGAAAATGTTTCCTCTGTGAATGATAATGGATACCCTATGAGAGCTGTTTTTTGGGTGGATAACAAGAATCGTCTACTGAGTGCAAATGCTCATTCAGTCCCATTTCTGGATGTAAACGTGGTACATGTCATACCATTTTGTGAAGTAGACATGGAGTCCCATAGTTTGAATGTCTCAGCTTCTGTATCTGGTGTTCGTCTTGGTGGGGGAATGAACTATGCTGAAGCCCTCCTGCATCGATTTGGAATACTTGGGCCTGATGATGGTCCCGCGCAGGGTCTTTCTAAAGGGCTGGAAAACTTACAAACGGGGCCTTTGGCAAAACTTTTCACGACAACACCTCTCATTGTTGACAATTCAGAAGATGTTGAGAGTGTGACAGAAGGGAAAGAAATCAAATTTCCACACTTGAAGCCGGATAATGTGGATGTAACTATAGAATTGAGAGATTGGTTATTTGCTCTTGAAAGTGCACAAGAGATGGCTGAAAGATGGTGGTTCTCCAGCCACGAAGAAGTAGGCAGAGAGCAGAGGTGTTGGCACGCAACTTTCCATATTTTACAAGTAAATGCTAAAAGTAGTCCAAAGAATGTTCCAGGCGGAAAATCACAATCACATAGAACACAACAATATCCCCTAGAACTTGTTACGGTTGGTGTCCAAGGGCTTCAGATCTTGAAGCCCCTTACCCAAAAAGATATTCCTTCATCAATGTTAACTGCAGATGCAGTTAAAGAATTTACCAACAGCGTTGGGGGTATCAATCTTGAAGTGGGCTTGGTATTACATGAGGATAATGTCGATGATGAAAAGGCTAATTGGGAGGTGGAAAACCTAAAATTCTCTATAAAGCAACCGATTGAGGCTGTTGTAACCAAGGATGAGGTCCAATACCTCACTTTTCTGTGCAAATCTGAAATTGATTCCATGGGCCGTATAACAGCTGGAATTCTAAGACTGCTTAAGCTAGAAGGTTCTGTTGGCCAGTCTGTAATGAATCAGCTAGGCAACCTAGGAAGTGAAGGCATAGACAAGATTTTCTCTCCTGAGAAACTCAGCATCGATGGTAGTGTTCGTATTGGAGGACATTCTCCATTACCAAACCTTATAAACGAAAGCCCGCGCAAATCGATGGAATCAACACTAACTTTGCTTGAGGAAGCAGTTGTGGATTCACAGGCTAAAGTTGATGCTTTGATAACTGATATTGGCACTTCTGAATCTACCTCTCAGCACCTTACTGCTGTGAAACAGCTTAGTCAGAAGATTGAGTCGATGCAGGGTTTAATGATGCAATTACGGAATCAACTTTAA 3639 0.4287 MESILARALEYTLKYWLKSFSRDQFKLQGRTVQLSNLDINGDALHSSVGFPPALNVATAKVGKLEIMLPSVSNVQIEPIIVQIDRLDLVLEENSDFIPSESPTSSTSSSASAKGSGYGFADKIADGMTIQIHTVNLLLETRGSARRQGGATWAPPMASITIHNLLLYTTNESWQVVNLKEAREFSCNKKYIYVFKKLEWESLSIDLLPHPDMFTDATLGHSQGGGNLRDDDGAKRVFFGGERFIEGISGEAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRALLRFMTGLCVCLNRGDVDFKAQRSTEAAGRSLVSIVVDHIFLCIKDSEFQLELLMQSLFFSRASLREGDSDCNLTRITIAGLFLRDTFSRPPCTLVQPSMQSVTRDAFEVPEFARSFCPPIYPLGEQQWQSIVGTPIICLHSLQIMPSPLPPSLASQTVIDCQPLAIHLQEESCLRISSFLADGIVINPGDILPDFSVKSFIFTLKGLDITVPLDKGQLDISKSYIDNTVQSSFAGARLHVENLLFLDSPSMKLRILNLEKDPACFCLWEDQPIDASQKKWAASASHLTLSLEASTGTLRHQNSLGWTAGMWRCVDLKDACIEVAMVTADGSPLLKIPPPGGIVRVGVACEQYLSNTSVEQLFFVLDLYAYFGRISEKIAAAGKSKQWNDMGNKSFNGKLLDKVPSDTAVSLAVKDLQLRFLESSSMDVEGMPLVQFVGDDLFISATHRTLGGAVVISSTLCWESVEIDCVDSEEYLTSENGSYFSSGENVSSVNDNGYPMRAVFWVDNKNRLLSANAHSVPFLDVNVVHVIPFCEVDMESHSLNVSASVSGVRLGGGMNYAEALLHRFGILGPDDGPAQGLSKGLENLQTGPLAKLFTTTPLIVDNSEDVESVTEGKEIKFPHLKPDNVDVTIELRDWLFALESAQEMAERWWFSSHEEVGREQRCWHATFHILQVNAKSSPKNVPGGKSQSHRTQQYPLELVTVGVQGLQILKPLTQKDIPSSMLTADAVKEFTNSVGGINLEVGLVLHEDNVDDEKANWEVENLKFSIKQPIEAVVTKDEVQYLTFLCKSEIDSMGRITAGILRLLKLEGSVGQSVMNQLGNLGSEGIDKIFSPEKLSIDGSVRIGGHSPLPNLINESPRKSMESTLTLLEEAVVDSQAKVDALITDIGTSESTSQHLTAVKQLSQKIESMQGLMMQLRNQL* 1213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3826 1212 Coils Coil 1191 1211 - -
Lja3g3826 1212 PANTHER UNCHARACTERIZED 1 1211 IPR026728 -
Lja3g3826 1212 Pfam N-terminal region of Chorein or VPS13 1 102 IPR026854 -
Lja3g3826 1212 PANTHER AMINO-TERMINAL REGION OF CHOREIN, A TM VESICLE-MEDIATED SORTER 1 1211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3826 Lja-Chr3 75354749 75366678 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3826 - - gmx:100811661 1882.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3826 3 75354749 75366678 Lja3g3826 3 75354749 75366678 ECH