Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3797 ATGGCGGCAAATACCACTACGAGTTCAGCTGGCACAGAAACACCTCTATTGGTGGTGGTGGCAGTGGAGTCCAGTGGAGTTGAGGAGGAGAAATGGTGGAACAAGGTGCTGGACATGGAGGAGGCGAAGCTTCAACTCCTCATTGCACTGCCAATGATTCTTACAAATTTATTCTATTACTTGATCACTTTGATTTCGGTCATGCTCGTTGGTCACCTCGGAGAGCTTCAACTTGCTGGCGCTACTCTCGCTAATTCATGGTTCAGTGTCACCGGCGTCGCTGTCATGGTAGGTTTAAGTGGAGCACTGGAAACACTCTGTGGGCAAGCATTTGGCGCAAGGGAATACCAAAAGTTGGGAATTTATCTACAAGCCTCTTGCATCATATCTCTTATTTTCTCTATCATTATATCCGTTATTTGGTTCTACACAGAACCCATCTTAGTGTTGCTTCATCAATCTCATGACATTGCGAGAACAGCTGCAATCTACATGAAGTTTCTCATCCCGGGATTATTCGCTTATTGTTTCTTGCAAAACATCTTGAGGTTTGTACAAACACAGTCTGTCGTCATGCCGCTGGTTGTCCTTTCAGCTCTTCCAGCATTGGTTCATGTTGGGATTGCATATGCCTTAGTTCATTGGACAGGTCTCAGATTCATAGGTGGACCAGTTGCAGCATGTGTTTCACTATGGATATCACTGGTAATGTTGGCCTCATATGTCATGTATTCAAAGAAGTTCAAACAGACATGGGAGGGATTTTCGACGCATTCATTCCATTATGTGTTTACAACCTTGAAACTTGCTCTGCCCTCAGCAGCAATGGTATGTTTTGAGTACTGGGCTTTCGAAGTTCTGGTTTTCTTAGCTGGACTGTTTCCTGACTCGGAAATAACAACTTCATTGATTGCCATATGTGCAAACACAGAATTCATTGCATACATGATCACGTATGGTCTCAGTGCGGCTGCGAGCACAAGGGTTTCAAATGAATTGGGAGCAGGCCATTCAGAAAGAGCTAAGCATGCTATGGGAGTCACTCTAAAGCTCTCTCTCCTCCTTGGTGTGTGTTTTGTTTTGGCACTTGGATTTGGTCACAATATCTGGATTCAGCTTTTTAGTAGTAGTTCAGCAATCAAAAAGGAGTTTGCTTCAGTGGCACCTTTGCTTGCGATTTCCATACTACTAGATTCTATCCAAGGTGTCCTGTCAGGGGTAGCTAGAGGATGTGGTTGGCAGCACTTGGCTGCTTATGTAAACCTTGCAACTTTTTATCTTATTGGTTTACCGATATCATGTCTCCTTGCATTTAAGACCAGTTTGCAGTACAAGGGTTTATGGATTGGTCTGATTTGTGGGATGGTCTGTCAAGCTGGAACTCTTTTACTTCTCACAACTCGTGCAAAATGGGCAAAACTGGAACTCTCCGGGGACAAAGATAAAGACAATGATCATCTCGTAGCTTGA 1470 0.4395 MAANTTTSSAGTETPLLVVVAVESSGVEEEKWWNKVLDMEEAKLQLLIALPMILTNLFYYLITLISVMLVGHLGELQLAGATLANSWFSVTGVAVMVGLSGALETLCGQAFGAREYQKLGIYLQASCIISLIFSIIISVIWFYTEPILVLLHQSHDIARTAAIYMKFLIPGLFAYCFLQNILRFVQTQSVVMPLVVLSALPALVHVGIAYALVHWTGLRFIGGPVAACVSLWISLVMLASYVMYSKKFKQTWEGFSTHSFHYVFTTLKLALPSAAMVCFEYWAFEVLVFLAGLFPDSEITTSLIAICANTEFIAYMITYGLSAAASTRVSNELGAGHSERAKHAMGVTLKLSLLLGVCFVLALGFGHNIWIQLFSSSSAIKKEFASVAPLLAISILLDSIQGVLSGVARGCGWQHLAAYVNLATFYLIGLPISCLLAFKTSLQYKGLWIGLICGMVCQAGTLLLLTTRAKWAKLELSGDKDKDNDHLVA* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3797 489 TIGRFAM matE: MATE efflux family protein 51 448 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja3g3797 489 PANTHER PROTEIN DETOXIFICATION 22 482 - -
Lja3g3797 489 Pfam MatE 272 433 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja3g3797 489 Pfam MatE 51 210 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja3g3797 489 CDD MATE_eukaryotic 41 473 IPR045069 GO:0042910|GO:1990961
Lja3g3797 489 PANTHER MULTIDRUG RESISTANCE PROTEIN 22 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3797 Lja-Chr3 74824596 74828449 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3797 K03327 - gmx:100816310 759.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3797 3 74824596 74828449 Lja3g3797 3 74824596 74828449 ECH