Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3423 ATGTGGACGAAGCAACTGCTACAGGCACCACCACCCCATAATCTCTTCCTATGTTGTTCAGCTCCGAGTGTTCCAAAAAAACCATCTTTTGTGAAACTGTGTCCGACCCAGAATGCCAAAAATCACTACAACAGAGTTAAGGCAATCTCTTTGGATGAACTTCCCCCAAACGCCCTTCGCAGGAAAAGTGACCCACAATGGAGAGGTGGCTTCACCCTTGGAGTCGACCTGGGTATGGCTCGCACTGGCATTGCCATCAGTAAAGGTTTCAACTTTCGCCCTGTGACGGTTTTGGAATTGCGAGGACAGAAGCTTGAGGTCCAGATGATAAACATTGCTGAACAAGAGGAGGCAGACGAGTTTGTAATTGGACTTCCAAGATCTTTTGACGGGAAGGAAACACCACAGTCAAACATAGTCCGTACTGTTGCAGGGAGGCTTGCTATTCGAGCTGCTGAGAGGGGTTGGAGAGTATATCTACAGGATGAGCATGGGACAACAACAGAAGCCGTAGATCGAATGGTCAACATGGGCTTAAGTAAGTCCTCTCAGCAGAGGAAACTTGATGCCTATGCTGCCATGATGGTACTGGAGAGATATTTCTCCACTTCGGGTAAGGATACTGAACTTGTTTTGCCAAAGAATCTAGAACTGCAAGGAAAACTCCGAAAGGGTCCTCCCAAAGACAATGATTTTTTCTCAGATGAAGATTAA 714 0.4664 MWTKQLLQAPPPHNLFLCCSAPSVPKKPSFVKLCPTQNAKNHYNRVKAISLDELPPNALRRKSDPQWRGGFTLGVDLGMARTGIAISKGFNFRPVTVLELRGQKLEVQMINIAEQEEADEFVIGLPRSFDGKETPQSNIVRTVAGRLAIRAAERGWRVYLQDEHGTTTEAVDRMVNMGLSKSSQQRKLDAYAAMMVLERYFSTSGKDTELVLPKNLELQGKLRKGPPKDNDFFSDED* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3423 237 Hamap Putative pre-16S rRNA nuclease [yqgF]. 70 205 IPR005227 GO:0006364
Lja3g3423 237 CDD YqgF 73 201 IPR005227 GO:0006364
Lja3g3423 237 Pfam Holliday junction resolvase 72 202 IPR005227 GO:0006364
Lja3g3423 237 PANTHER POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN 19 236 IPR005227 GO:0006364
Lja3g3423 237 SMART rnase_8s 70 170 IPR006641 GO:0006139
Lja3g3423 237 Gene3D - 72 210 IPR037027 GO:0006139
Lja3g3423 237 PANTHER POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN 19 236 - -
Lja3g3423 237 SUPERFAMILY Ribonuclease H-like 71 203 IPR012337 -
Lja3g3423 237 TIGRFAM RNAse_H_YqgF: putative transcription antitermination factor YqgF 73 201 IPR005227 GO:0006364
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3423 Lja-Chr3 67571518 67575728 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3423 - - lja:Lj3g3v1440180.1 480.715