Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3398 ATGACCATGGTAACCGCCGAAGTAGAGAAACCCCTTCAAGTACTTCCCATTCTCTCAAGAGACACCACTTTCACATCTCTATCAAGAAGGTTGGAAGGTAAAGTCGCCATTGTAACTGGCGGGGCCAGAGGAATAGGTGAAGCAACGGTGAGAGTTTTCGTGAAGCATGGCGCAAAGGTAGTAATCGCCGATGTCGAGGACACACTCGGAACCATGCTTGCAGAGACATTAGCTCCTTCAGCTACTTACGTCCACTGCGATGTAAGCATTGAAGAAGACATTGAAAATCTGGTGAGTTCGACAATCTCTCGCTATGGACAGTTAGACATCATGTTCAACAATGCCGGTGTTCTCGGGAACCAGTCCAAGAACAAGAGCATTGTGAATTTCGACCCTGAAGAGTTTGATAAAGTGATGCGCGTGAACGTGAAGGGAACGGCGCTTGGAATGAAGCACGCGGCGAGGGTGATGATTCCGAGGGGTGTTGGGTGTATAATCTCCACCGCGAGTGTGGCTGGGCTTATGGGTGGGCTTGGGCCGCACGCTTACACGGCCTCGAAGCATGCCATTGTTGGGCTCACGAAGAACGTGTCTTGTGAATTGGGTAGGTATGGGATTAGGGTGAATTGCATTTCTCCATTTGGGGTCGCCACGTCGATGCTTGTCAACGCGTGGCGAACGAGCGGTGGTGGTGGTGGTGACGACGATAAATGTGGCGATGACGATGATGATAGCTTCAATTTTGGGAATTTTGGGTTGCCACTTCAAGAGGAAGTGGAGAAAATGGAGGAGTTTGTGAGGGGGTTGGCAAACTTGAAAGGAACAACTTTAAAGGCTAAACATGTTGCTGAGGCCGCTCTTTATCTTGCTAGTGATGAATCCAAGTATGTTAGCGGTCATAATCTTGTTGTGGATGGTGGAGTCACCTCTTCAATAAATTGTGTTGGCTTGTAA 954 0.4885 MTMVTAEVEKPLQVLPILSRDTTFTSLSRRLEGKVAIVTGGARGIGEATVRVFVKHGAKVVIADVEDTLGTMLAETLAPSATYVHCDVSIEEDIENLVSSTISRYGQLDIMFNNAGVLGNQSKNKSIVNFDPEEFDKVMRVNVKGTALGMKHAARVMIPRGVGCIISTASVAGLMGGLGPHAYTASKHAIVGLTKNVSCELGRYGIRVNCISPFGVATSMLVNAWRTSGGGGGDDDKCGDDDDDSFNFGNFGLPLQEEVEKMEEFVRGLANLKGTTLKAKHVAEAALYLASDESKYVSGHNLVVDGGVTSSINCVGL* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3398 317 PRINTS Glucose/ribitol dehydrogenase family signature 204 221 IPR002347 -
Lja3g3398 317 PRINTS Glucose/ribitol dehydrogenase family signature 35 52 IPR002347 -
Lja3g3398 317 PRINTS Glucose/ribitol dehydrogenase family signature 183 202 IPR002347 -
Lja3g3398 317 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Lja3g3398 317 PRINTS Glucose/ribitol dehydrogenase family signature 106 117 IPR002347 -
Lja3g3398 317 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 2A-LIKE 17 317 - -
Lja3g3398 317 Pfam Enoyl-(Acyl carrier protein) reductase 259 309 - -
Lja3g3398 317 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 17 317 - -
Lja3g3398 317 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Lja3g3398 317 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 106 117 IPR002347 -
Lja3g3398 317 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 183 202 IPR002347 -
Lja3g3398 317 Gene3D - 21 315 - -
Lja3g3398 317 CDD secoisolariciresinol-DH_like_SDR_c 30 309 IPR045309 GO:0016616
Lja3g3398 317 Pfam short chain dehydrogenase 34 225 IPR002347 -
Lja3g3398 317 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 32 309 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3398 Lja-Chr3 67009152 67010525 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3398 31 309 Acyl Lipid Metabolism Gene Families AT1G63380 31.186 3.01e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3398 - - gmx:100790562 494.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3398 3 67009152 67010525 Lja3g3398 3 67009152 67010525 ECH