Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3318 ATGGTCGGAAAACCAATGGCCACCGCTACTTCCCGCGAAAGGCTCGCGAGTCTCGTGAACTCTGCAAACATGGCCATTGACATACCCTCCAAGCTCGAATCGTTGCGCCAACTGAGACTCGAGCTTCCCCAGGAAGACCCCGTTCTTCTCACCGAGTTCCTCCCTTTGCTCTTCGAGTTCCTCTCCGACCACTTCAGCCCCGTTCGCAAATTCGTCACTGAGATGGTTGGTGAGATTGGATTGAAGAACACGGAATTCTTGTCTGACATTGTGCCTGTGCTGATTGATGTATTGGATGATGATACGCCTGTGGTTGTTCGCCAAGCTATTCTGTGTGGAATTGATTTGTTTCGCTCCACCCTCCAGAAACTCGCGATTCAGGGTATATATTCTAGTGATTTAGACGGTGCACTTGAATCTGCATGGTCGTGGATGGTTAGATTCAAAGACAAAGTATACACATTAGCTTTTCAACATGGAAGTAGTGGTGCAAAGCTTCTGGCACTGAAGTTTGTTGAAGCAGTTATTCATCTTTATACACCTGATCCTAATGGCTCCTCAGAACCCACTCCTCACCAAGGACGGAACATGGAATTTAATATATCATGGTTGAGGCGAGGTCATCCTATTCTTAATGTTGGAGATTTGTCAATTGAAGCGAGTCATAGTTTGGGTCTCTTGCTTGATCAATTGAGATTTCCAACTGTGAAGTCTCTTAGTAATGCAGTGATCATTGTGGTAATTAAAAGTCTTTCAGCCATTGCAATAAACCGGCCAGCATTCTATGGTCGCATCTTGCCGGTTTTGCTCAGTTTGGAACCTTCAAGCTCTGTAGTTAATGGGGTCTGTGTAACTGCCGTCCATCTTGCTTTAAAGAATGCCTTTCTTAGCTGCTCGAAATGTACACACCCAAGTGCTGCTCCGTGGAGAGATCGTTTAGCAGGCGCCTTGAAGGAGATGCAATCTGAAGGGAAGGCAGATCGGGTGTTCCACCTAATCTCTCCAAGTAATGGAAGTATACAGAGAGAGAAGGATGATCAACCAGTTATCAAGGAAGAAGAACCTGCAGTGAATTCATCTGATTCTGTGCACATTAAATTGGCAAGAAAACGATCAGGATCACAAGACAGAGGTGATTTATCTGTAGATGAAGATGTGCCTGGAAAACGTGTCAGAACAATTGTTGGTTTAACAGAACCTAAGAAAGAGTTAGATGATTGTGCTGTTAACTCTCAGGATGACGCTCATTCAACACCAACATCATCAAAAGGAGATGTGGAGAATGGGCCTGTACAGCAACTTGTTGCCATGTTTGGTGCTTTAGTTGCTCAAGGTGAAAAAGCTGTTTCATCTTTGGAACTTCTTATCTCAAGTATTTCTGCTGACTTGCTAGCTGAGGTGGTGATGGCAAATATGCGTTACCTACCTCCAAACTACCCCCATGCTGAAGGAAATGATGAACAGTTGCATGAAATTTGTATATTTGGTTCTGATGACAAGGCTAAATATCCACCGTCATTTGTAGCTGGTGTTATGTCACTTTCTACTACTTTCCCGCCAGTTGCTTCACTTCTTGAGACCCATCGATCTGTGTCAAATGATGTAGTGAAGTCTCATGAGGAGGAAGAAATTTCGGCAACTGGAGTAGGCAGTGCTGTTGTGCATTCTGGCATGAATCTTTCAGCTGTAAATGTATCATCGCCTCCGGATTTTCCATCTTCTGATGCATGTATACCTGGAGTTGAGAATGGCAGCACGGCTATGGCTTCCGATATCCATGATGTTGGAAACTTAGAGAGTGGAATCCCTGGCTTGGATTCTTGTGGTCGTAGTGATACCTTGTCAGAAACTTTGGCTGCTTCCTCATTGGCTTCCACTGAGGTACAATTAGAAGATGCAGATCAAGAGCAAGTTACGAGTTTGGATCAAAGGTCATCCCTGAACTTAGTTCCATCAATATCAACAGATAGATCTGAGGAGCTGAGCCCAAAAGGAGTTGTTACAGATGCCAATAGCATTGTGTCCTCAACAGCTACATCAGCTGTGTTGCCTTCCCGTTTAGTCCTGCCAAAGATGATTGCTCCTGTTGTTGACCTTGCAGATGAACAAAAGGATGATTTGCAAATGTCATGTTTTATGCGTATCATCGATGCACTTAAGCAAATAGCTGAAGCTGGAGGCTCAAAAGTTCGATTTTCGATACTTGCCTATTTAGGAGTTGAGTTTCCCTTGGATTTAGACCCATGGAAATTATTACAGAAGCACATTTTGATTGATTACACTAGTCATGAGGGACACGAGTTGACATTACGTGTCCTCTACAGGTTATTTGGCGAGGCTGAAGAGGAGACTGACTTCTTTTCTTCCACGACTGCAGCTTCTGTATATGAAAGATTCCTCTTAACAGTGGCCGAAGCGCTTAGAGATTCCTTTCCACCTTCAGACAAATCATTAAGTAAACTGCTTGGTGAATCTCCTTATTTACCAAAATCAGTTTTAAAAATTTTAGAAAACATGTGTTCTCCTGGAAATGGGGATAAAGTTGAAAAGGAATCACTTTCATTCAATGCGGATAGAGTTACTCAAGGTCTTAGTGCTGTATGGAGTTTGATTCTTCTCAGACCTCCCATTCGAGATACTTGTTTAAAAATTGCTTTACAGAGTGCAGTGCATCACTTGGAAGAAGTGCGTATGAAGGCAATACGTCTGGTGGCAAATAAACTTTATCCTTTACCATTCATTTCCCAGAAAATAGAAGATTTTGCGAAGGAAATGCTATTCAGAGTGATGAGTGGTGATGCATCTGAAGCTACTGAAGCTGAAGGGTCTATTGCTGTTTCACAAAATGGGCCTGATGTTGAAAAGCTTCCAGAAGAACCATCATCTTTGAGTGGCAGCAGTAAGGATGTCTCCTCAGATAATCACCAACCGTGCACATCTGACAATGCTGTGCCTGATTCAGTTTCTGAGTCTCAGAGATGCATGTCATTGTATTTTGCTTTGTGCACAAAGAAACACTCTCTCTTTCGCCAAATATTTGTCATCTATAGAAGCATACCAAAGGCTGTGAAGCAGGCTGTTCATCGTCAAATTCCTATATTAGTGCGCACTATGGGTTCATCTTCAGATCTCCTTGAAATTATTTCAGATCCCCCAAATGGAAGCGAGAATCTCCTAATGCAGGTGTTGAATACACTTACAGATGGTACAATCCCTTCTAAGGATTTAATATTTACTGTGAAAAGGTTACATGATTCAAAACTTAAGGATGCTGAGGTCCTTATTCCGATATTACCATTCCTACCAAAAGATGAGGTGATGCCGGTATTTCCTCACTTTGTGAGTCTTCCTTCTGAGAAGTTCCAAGTTGCACTGGGTCGCATACTGCAGGGGTCATCGCAATCTGGTCCAGTGCTTACTCCGGCTGAAGTTTTAATTGCTATTCATGGGATTGATCCTGAAAGAGATGGAATTCCCTTAAAGAGGGTAACAGATGCATGCAATGCTTGCTTTGAGCAGCGGCAAATATTCACTCAAGAAGTTCTTGCTAAAGTTTTGAATCAACTGGTCGAGCAGATTCCGCTTCCTTTACTGTTCATGCGTACAGTTTTACAAGCTATTGGTGCTTTTCCTACACTGGTGGACTTTATAATGGAGATTCTTTCTCGCCTTGTGAAAAAGCAGATATGGAAATACCCTAAGTTGTGGGTAGGATTCTTGAAGTGTGTGCAGTTGACAAAACCTCAATCACTTGGTGTTTTGCTTCAGCTACCTATAGCACAATTGGAAAATGCTTTAAATAGAATTGCAGCACTAAAAGCACCATTAATTGCTCATGCTACCCAGCCAGAAGTACAATCTACCCTTCCCAGGTCTGTACTGGTTCTTCTGGGAATTGTTTCTGACGCACAGATTTCAAATCAGGCGCAAACTAGTCAAACACAGACCGATGAGACAAGCCTCTCAGATAAGGACACAGTAACAGAAAAATCTAAAGAATCTTCTATAGCGAGCTAA 4017 0.4269 MVGKPMATATSRERLASLVNSANMAIDIPSKLESLRQLRLELPQEDPVLLTEFLPLLFEFLSDHFSPVRKFVTEMVGEIGLKNTEFLSDIVPVLIDVLDDDTPVVVRQAILCGIDLFRSTLQKLAIQGIYSSDLDGALESAWSWMVRFKDKVYTLAFQHGSSGAKLLALKFVEAVIHLYTPDPNGSSEPTPHQGRNMEFNISWLRRGHPILNVGDLSIEASHSLGLLLDQLRFPTVKSLSNAVIIVVIKSLSAIAINRPAFYGRILPVLLSLEPSSSVVNGVCVTAVHLALKNAFLSCSKCTHPSAAPWRDRLAGALKEMQSEGKADRVFHLISPSNGSIQREKDDQPVIKEEEPAVNSSDSVHIKLARKRSGSQDRGDLSVDEDVPGKRVRTIVGLTEPKKELDDCAVNSQDDAHSTPTSSKGDVENGPVQQLVAMFGALVAQGEKAVSSLELLISSISADLLAEVVMANMRYLPPNYPHAEGNDEQLHEICIFGSDDKAKYPPSFVAGVMSLSTTFPPVASLLETHRSVSNDVVKSHEEEEISATGVGSAVVHSGMNLSAVNVSSPPDFPSSDACIPGVENGSTAMASDIHDVGNLESGIPGLDSCGRSDTLSETLAASSLASTEVQLEDADQEQVTSLDQRSSLNLVPSISTDRSEELSPKGVVTDANSIVSSTATSAVLPSRLVLPKMIAPVVDLADEQKDDLQMSCFMRIIDALKQIAEAGGSKVRFSILAYLGVEFPLDLDPWKLLQKHILIDYTSHEGHELTLRVLYRLFGEAEEETDFFSSTTAASVYERFLLTVAEALRDSFPPSDKSLSKLLGESPYLPKSVLKILENMCSPGNGDKVEKESLSFNADRVTQGLSAVWSLILLRPPIRDTCLKIALQSAVHHLEEVRMKAIRLVANKLYPLPFISQKIEDFAKEMLFRVMSGDASEATEAEGSIAVSQNGPDVEKLPEEPSSLSGSSKDVSSDNHQPCTSDNAVPDSVSESQRCMSLYFALCTKKHSLFRQIFVIYRSIPKAVKQAVHRQIPILVRTMGSSSDLLEIISDPPNGSENLLMQVLNTLTDGTIPSKDLIFTVKRLHDSKLKDAEVLIPILPFLPKDEVMPVFPHFVSLPSEKFQVALGRILQGSSQSGPVLTPAEVLIAIHGIDPERDGIPLKRVTDACNACFEQRQIFTQEVLAKVLNQLVEQIPLPLLFMRTVLQAIGAFPTLVDFIMEILSRLVKKQIWKYPKLWVGFLKCVQLTKPQSLGVLLQLPIAQLENALNRIAALKAPLIAHATQPEVQSTLPRSVLVLLGIVSDAQISNQAQTSQTQTDETSLSDKDTVTEKSKESSIAS* 1339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3318 1338 Pfam Symplekin/PTA1 N-terminal 103 321 IPR032460 -
Lja3g3318 1338 MobiDBLite consensus disorder prediction 403 427 - -
Lja3g3318 1338 SUPERFAMILY ARM repeat 33 1245 IPR016024 -
Lja3g3318 1338 MobiDBLite consensus disorder prediction 336 385 - -
Lja3g3318 1338 MobiDBLite consensus disorder prediction 938 986 - -
Lja3g3318 1338 Pfam Symplekin tight junction protein C terminal 1090 1268 IPR022075 -
Lja3g3318 1338 MobiDBLite consensus disorder prediction 1308 1338 - -
Lja3g3318 1338 SUPERFAMILY ARM repeat 36 291 IPR016024 -
Lja3g3318 1338 Gene3D - 4 346 IPR011989 -
Lja3g3318 1338 PANTHER SYMPLEKIN/PTA1-RELATED 1 1241 - -
Lja3g3318 1338 MobiDBLite consensus disorder prediction 960 986 - -
Lja3g3318 1338 MobiDBLite consensus disorder prediction 411 427 - -
Lja3g3318 1338 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 1 1241 - -
Lja3g3318 1338 MobiDBLite consensus disorder prediction 364 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3318 Lja-Chr3 65344930 65364478 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3318 K06100 - gmx:100779360 2060.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3318 3 65344930 65364478 Lja3g3318 3 65344930 65364478 ECH