Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3310 ATGACGGAGGACAGAACCGTCGTGACGTGGCGTACCATCCCCAACTTCAAAGCTTCCTTCAACGACGTCGTTTTACCCACCAACCACCACCGCCAACACCTCTGGAACGACGCCGTTTTCACCTTCGCCGGCGCCGGCACCGGCATCCACTGCAAATTCGCCAGCCTCTCTGCAGCGCAACCGAAATCCGACAAGGAATTTCTCCCGACGCCGGCTCAGCTCCTGAACCACCCGCTCGCCGCCGTCGCTCTCGTTCCCAAAGACGCCGCGCTGTTCCTCGCCGGGGCTTTCGCCGGCGCTATTGCCAAAACCGTCACCGCGCCGCTTGATCGCATCAAAATTCTCATGCAGACTCACGGGGTGCGAGTTGGGCAAGAAAGTGCCAAGAGAGCTATTGGTTTCGTTGAGGCCATATCGGCAATAGGGAAGGAAGAAGGCATTAAAGGTTACTGGAAGGGCAACCTCCCACAGGTGATTCGGGTTATACCTTATAGTGCTGTCCAGCTTTTTGCTTATGAATTTTATAAGAAAATATTCAAGGGAGAGCATGATGAGCTCTCTGTTGTGGGAAGACTTGCAGCAGGTGCTTTTGCTGGCATGACATCAACTTTTATCACCTACCCATTAGATGTCCTGAGATTGCGATTAGCTGTTGAACCTGGTTGTCGAACAATGTCAGAGGTCTCCTTGAGCATGCTAAGAGAGGAAGGATTTGCATCTTTCTACTATGGTCTTGGACCTTCTCTTATTGCAATAGCTCCATATATTGCAGTCAACTTTTGTGTTTTTGACTTATTGAAGAAGTCATTGCCAGAGGAATATCAAAAGAGAACTGAAGCATCTCTTGTCACTGCGGTGCTTTCAGCATCGCTTGCCACACTTACATGCTATCCTCTGGACACTGTACGAAGACAGATGCAATTGAAGGGTACACCTTATAAGACAGTATTAGATGCTATTTCAGGTATCGTGGCACGGGATGGAGTTATTGGCTTGTATCGTGGATTTCTGCCCAACGCTTTAAAGAACCTACCAAACAGCAGCATCAGGCTCACCACCTATGATATTGCCAAACGCCTAATTGCAGCTAGTGAGAAGGAGTTTCAAATAATTACTGAGGATAACCGCAACAATCTAAAGAAACAACAATAG 1152 0.487 MTEDRTVVTWRTIPNFKASFNDVVLPTNHHRQHLWNDAVFTFAGAGTGIHCKFASLSAAQPKSDKEFLPTPAQLLNHPLAAVALVPKDAALFLAGAFAGAIAKTVTAPLDRIKILMQTHGVRVGQESAKRAIGFVEAISAIGKEEGIKGYWKGNLPQVIRVIPYSAVQLFAYEFYKKIFKGEHDELSVVGRLAAGAFAGMTSTFITYPLDVLRLRLAVEPGCRTMSEVSLSMLREEGFASFYYGLGPSLIAIAPYIAVNFCVFDLLKKSLPEEYQKRTEASLVTAVLSASLATLTCYPLDTVRRQMQLKGTPYKTVLDAISGIVARDGVIGLYRGFLPNALKNLPNSSIRLTTYDIAKRLIAASEKEFQIITEDNRNNLKKQQ* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3310 383 ProSiteProfiles Solute carrier (Solcar) repeat profile. 86 178 IPR018108 -
Lja3g3310 383 PANTHER ADP/ATP CARRIER PROTEIN 5 373 - -
Lja3g3310 383 PANTHER SOLUTE CARRIER FAMILY 25 5 373 - -
Lja3g3310 383 Pfam Mitochondrial carrier protein 91 181 IPR018108 -
Lja3g3310 383 Pfam Mitochondrial carrier protein 185 271 IPR018108 -
Lja3g3310 383 Pfam Mitochondrial carrier protein 280 362 IPR018108 -
Lja3g3310 383 ProSiteProfiles Solute carrier (Solcar) repeat profile. 276 360 IPR018108 -
Lja3g3310 383 SUPERFAMILY Mitochondrial carrier 89 355 IPR023395 -
Lja3g3310 383 ProSiteProfiles Solute carrier (Solcar) repeat profile. 186 269 IPR018108 -
Lja3g3310 383 PRINTS Mitochondrial carrier protein signature 104 118 IPR002067 GO:0055085
Lja3g3310 383 PRINTS Mitochondrial carrier protein signature 91 104 IPR002067 GO:0055085
Lja3g3310 383 PRINTS Mitochondrial carrier protein signature 153 173 IPR002067 GO:0055085
Lja3g3310 383 PRINTS Mitochondrial carrier protein signature 201 219 IPR002067 GO:0055085
Lja3g3310 383 PRINTS Mitochondrial carrier protein signature 285 307 IPR002067 GO:0055085
Lja3g3310 383 PRINTS Mitochondrial carrier protein signature 242 260 IPR002067 GO:0055085
Lja3g3310 383 Gene3D Mitochondrial carrier domain 88 361 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3310 Lja-Chr3 65177170 65183206 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3310 1 382 Organic Solute Cotransporters AT3G51870 67.539 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3310 K14684 - gmx:100796878 588.571