Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3107 ATGCAGCTCCACATATCTCCAAGTTTGAGGCATGTTACTGTGCTTCCTGGCAAAGGGTTGAAGGAGTTTATCAAAGTGAAGGTTGCATCGAGGCGTCTTTCTTATAGGATGCTCTTTTACTCACTCTTGTTCTTCACTTTTCTTCTACGGTTTGTGTTTGTTTTAACAGCAGTGGATGGCATTGATGGAGAAAACAAGTGCTCTACCATAGGTTGCTTAGGAAAAAAACTAGGGCCAAGGATTTTGGGAAGAAGGCCTGAATCAGCTGTCCCAGAAGTGATATATCAAACATTAAATGAACCCCTTGACAAAGAAGGACTACAGGGAAGATCTGATATTCCACAGACTTTAGAAGAGTTCATGACTGTTATGAAGGAAGGTGGATATGATGCCAAGACATTTGCAGTTAAACTTCGAGAAATGGTAACCCTTATGGAACAAAGGACTAGGATGGCTAAAATCCAAGAATATCTATATCGTCATGTAGCGTCAAGCAGCATACCTAAACAACTTCATTGCCTTGCCTTGAGGCTGGCCAATGAGCACACCAACAATGCAGCGGCGCGCCTTCAGCTGCCATCTGCAGAATTAGTCCCTGCCCTGGTTGACAATTCTTACTTCCACTTTGTCCTAGCCTCAGACAATGTCATCGCCGCCTCTGTCGTTGCGACATCACTTGTTCGGAACAGTTTGCGATCCCAGAAAGTTGTTCTGCACATAATCACAGATAAAAAGACTTATTATCCCATGCAGGCATGGTTCTCATTGCATCCTTTATCACCTGCAATAATTGAGGTAAAGGCATTGCACCATTTCGATTGGTTCACAAAAGGAAAGGTGCCTGTTCTCGAAGCAATGGAGAAAGATCAAAAGGTGCGGTCACAGTTTAGAGGGGGCTCATCAGCTATAGTGCAGAATTCTACTGAGAAGCCCAATGTTATTGCAGCAAAACTACAAGCACTTAGTCCAAAGTATAATTCAATGATGAACCACATCCGGATAAATCTCCCAGAGTTGTTTCCAAGTCTTAACAAGGTGGTCTTCCTTGATGATGATATTGTGGTACAAACTGATCTTACACCTCTATGGGACATTGACATGAATGGAAAAGTCAATGGGGCAGTAGAAACATGTGTTGGAGAAGATAAGTTTGTGATGTCAAAGAGGTTGAAAAGCTATTTGAACTTTTCCCACCCTCTAATATCTGAAAATTTCAATCCCAATGAATGTGCTTGGGCCTATGGCATGAACATTTTTGATTTGGAGGCTTGGAGGAAGACCAATATAAGCAATAGATATCATTATTGGGTTGAGCAGAACATTAAATCAGACCTGAGCTTGTGGCAGCTAGGGACATTACCTCCTGGATTGATAGCATTTCATGGTCATGTTCACATTATCGATCCTTTTTGGCATATGCTAGGATTGGGATATCAGGAAAATACGAGTTCTGCTGATGTTGAGAGTGCTGGTGTCATTCATTTCAATGGCAGGGCGAAGCCATGGCTAGAAATAGCTTTTCCGCAGTTACGGCCATTGTGGACAAAGTATGTCAATTTCTCAGATAAGTTCATCAAGAGTTGTCACATTAGGCCATGA 1599 0.4221 MQLHISPSLRHVTVLPGKGLKEFIKVKVASRRLSYRMLFYSLLFFTFLLRFVFVLTAVDGIDGENKCSTIGCLGKKLGPRILGRRPESAVPEVIYQTLNEPLDKEGLQGRSDIPQTLEEFMTVMKEGGYDAKTFAVKLREMVTLMEQRTRMAKIQEYLYRHVASSSIPKQLHCLALRLANEHTNNAAARLQLPSAELVPALVDNSYFHFVLASDNVIAASVVATSLVRNSLRSQKVVLHIITDKKTYYPMQAWFSLHPLSPAIIEVKALHHFDWFTKGKVPVLEAMEKDQKVRSQFRGGSSAIVQNSTEKPNVIAAKLQALSPKYNSMMNHIRINLPELFPSLNKVVFLDDDIVVQTDLTPLWDIDMNGKVNGAVETCVGEDKFVMSKRLKSYLNFSHPLISENFNPNECAWAYGMNIFDLEAWRKTNISNRYHYWVEQNIKSDLSLWQLGTLPPGLIAFHGHVHIIDPFWHMLGLGYQENTSSADVESAGVIHFNGRAKPWLEIAFPQLRPLWTKYVNFSDKFIKSCHIRP* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3107 532 SUPERFAMILY Nucleotide-diphospho-sugar transferases 208 531 IPR029044 -
Lja3g3107 532 Pfam Glycosyl transferase family 8 175 506 IPR002495 GO:0016757
Lja3g3107 532 PANTHER GALACTURONOSYLTRANSFERASE 12-RELATED 12 530 - -
Lja3g3107 532 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 209 527 IPR029044 -
Lja3g3107 532 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 12 530 IPR029993 GO:0047262
Lja3g3107 532 CDD GT8_like_1 207 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3107 Lja-Chr3 59265258 59270439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3107 1 531 Glycosyltransferase AT5G54690 78.987 0.0 867
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3107 K20867 - gmx:100802623 976.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3107 3 59265258 59270439 Lja3g3107 3 59265258 59270439 PCT