Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3106 ATGGGGATGAAGAATGATGGTCAGAAACAACAGGTTCTTCATCAGGGTGTTGTTGGTGGTGGTGGCCGAAGAACCAATGGCTTCATTCCTAGCTCTTTTCGTGCTATCTCCAGCTACCTGAGGATTGTTTCAAACGGTGCTTCCACCGTTGCACGGTCCGCCGCGTCGGTTGCTTCATCGATTGTGGATAGGGATGATGATGCGGATCATGATCAGGTCATCTGGGCTGGGTTTGATACGTTAGAGGGTGAGGGACAAGTCAGTCAGAAAGTACTTCTTCTTGGCTATCGGTCAGGCTTCCAGGTCTGGCTTGTTGACGAATCAAATAATGTACGTGACCTAGTTTCCAGACACGATGGTCCTGTTTCGTTTATGCAAATGGTACCAAATCCAATTGCATCAAAGAGATCAGAAGACAAGTTTGCAAACAGCCGCCCGCTGTTGGTTGTTTGTGCTGATGGGTTCTTTGCAGGAGGCAGCAATGTTAAGGATGGGTTGACCGCCCCTTCCAATGGGAGCGCTTCAAACTCGCATGATCAAATGAGTGGCAACTATCTGCCAACTACTGTGCAGTTTTATTCTATGAAATCCCACTCATATGTTAATGTAATGAAGTTTAGATCAGTTGTCTATTCTGTAAGATGTAGTTCTCGAATAGTCGCTGTTTCTCAATCCACCCAGATACACTGTTTCAATTCTATCACGTTAGAAAGGGAATATACTTTACTTACAAATCCTATAGTCATGAGTGTTCCTGGCTCTGGAGGCGTCGGCTATGGACCACTTGCAGTTGGTCCGAGATGGTTGGCTTATAGTGGTTGCCCGGTTGTAGTCTCCGCTTCTGGGCATGTCAGTCCGCAGCATTTGATGCCTTCTGCAAGCTTTCCTGGTTTTTCTTCAAATGGGAGCTTGATTGCACACTATGCCAAAGAGTCGAGCAAGCATCTTGCTACTGGGATTGTGACCCTTGGAGATATGGGATATAAGAAACTTTCCAAATACTGCTCTGAGAACAATGGTTCATTACAATCTGTAAATTCAGGCTCGAAGGGCAATGGAACCATTAATGGCCATTCGGCAGATGCCGATAACATTGGAATGGTCATTGTTAAAGATATTGTCACCAAAAATGTTGTTGCCCAATTCCGGGCCCACAAGAGTCCCATTTCAGCCTTATGCTTTGATCCTAGTGGCACCATCTTAGTGACTGCTTCGGTTCAGGGTCATAACATAAATGTTTTCAAGATAATGCCTGGACGTGAGAATTCCTCAACATCTGATGCTGATCCTTCTTATGTTCATTTGTACAGACTTCAACGCGGCTTTACGAATGCAGTTATACAAGATATCAGTTTTAGTGATGACAGCAAGTGGATTATGATTAGTTCCTCGAGGGGCACCAGCCACTTATTTGCCATAAATCCTCAAGGAGGATATGTAAATATTCAGTCTTACGACGATAGTTTTACCACAAAAAATAGCGGAACTGGTGCCGCAACTAATCAAATAGTTTGCCGGCCTCATAGTTCAGCCCTGCAAAGGCCCAAACAGCAGAGCTTGTTTGTGACTGGACCTCCAATCACACTTTCTGTAGTCAGCAGAATTAGGAACGGAACTAATGGCTGGAGAGGCACTGTAAGCGGCGCTGCGGCAGCTGCAACTGGTAGGAAGAGTTCCCTTTCCGGGGCTATTGCATCATCATTCCGTAACTGTAAAGGAAGTGAAGGGAACTATTCCAAGTCAAAGTATCAGTTGTTGGTATTTTCTCCTAGTGGATCCATGATACAATATGCGCTGCGAACATTAACTGGTCAAGATTCAACTGTTGCTTCTGGATTAACCCCTCCTTATGAATCCATGCAACAGGCTGATACAAGGTTAGTAGTTGAGGCCATGCATAAATGGAATATATGTCAGAGTCACAGTCGGAGAGAGCGAGAAGATAATGTTGACATATACGGTGAGAATGGAATTTCAGACAGCAAAAAAATATATCCGGAGGAAGTGAAGGAGGACATCATGAGCCCTAAAATGAAAAATGGAGCCATGAAAGTGAACCCTTGCGAGGATGCGCATCATTTGTATATTTCGGAAGCTGAACTGCAAATGCATGAAGCTCAGGTTCCACTGTGGGGAAAGCCAGAGATATATTTTCAGTCAATGTTGAAAGACTCTAACATAATGGATGAAGAAGCTGCTTCTGGAGGAGAATTTGAGATTGAAAGGATTCCAACTTGCATGATTGAAGCTAGATCAAAGGACTTGGTTCCAATTTTTGACTATGTTCAGAACCCAAAATCACAACAAACAAGGACTCATTCTCTGGATAGCAAAATAAGTGAACAACTCTTACATCATAGTGAGACTGAAGGAACTGAGTGGGATAATCATGTCAAAAGGACTGAAACGATGGACTTTGTAAATAACAACACCCTTAAACCAGATACTCTGCATGAGATTGTAAATAACAGAATGGAGCACTTAAACATGGAGGCTCACCTCATGCATGTAAATAATGACACAAGGCCTGAAAATGAAGAACCATTTTGA 2550 0.4357 MGMKNDGQKQQVLHQGVVGGGGRRTNGFIPSSFRAISSYLRIVSNGASTVARSAASVASSIVDRDDDADHDQVIWAGFDTLEGEGQVSQKVLLLGYRSGFQVWLVDESNNVRDLVSRHDGPVSFMQMVPNPIASKRSEDKFANSRPLLVVCADGFFAGGSNVKDGLTAPSNGSASNSHDQMSGNYLPTTVQFYSMKSHSYVNVMKFRSVVYSVRCSSRIVAVSQSTQIHCFNSITLEREYTLLTNPIVMSVPGSGGVGYGPLAVGPRWLAYSGCPVVVSASGHVSPQHLMPSASFPGFSSNGSLIAHYAKESSKHLATGIVTLGDMGYKKLSKYCSENNGSLQSVNSGSKGNGTINGHSADADNIGMVIVKDIVTKNVVAQFRAHKSPISALCFDPSGTILVTASVQGHNINVFKIMPGRENSSTSDADPSYVHLYRLQRGFTNAVIQDISFSDDSKWIMISSSRGTSHLFAINPQGGYVNIQSYDDSFTTKNSGTGAATNQIVCRPHSSALQRPKQQSLFVTGPPITLSVVSRIRNGTNGWRGTVSGAAAAATGRKSSLSGAIASSFRNCKGSEGNYSKSKYQLLVFSPSGSMIQYALRTLTGQDSTVASGLTPPYESMQQADTRLVVEAMHKWNICQSHSRREREDNVDIYGENGISDSKKIYPEEVKEDIMSPKMKNGAMKVNPCEDAHHLYISEAELQMHEAQVPLWGKPEIYFQSMLKDSNIMDEEAASGGEFEIERIPTCMIEARSKDLVPIFDYVQNPKSQQTRTHSLDSKISEQLLHHSETEGTEWDNHVKRTETMDFVNNNTLKPDTLHEIVNNRMEHLNMEAHLMHVNNDTRPENEEPF* 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3106 849 Pfam WD domain, G-beta repeat 379 408 IPR001680 GO:0005515
Lja3g3106 849 PANTHER AUTOPHAGY-RELATED PROTEIN 18F 3 825 - -
Lja3g3106 849 SUPERFAMILY WD40 repeat-like 89 474 IPR036322 GO:0005515
Lja3g3106 849 Gene3D - 298 522 IPR015943 GO:0005515
Lja3g3106 849 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 3 825 IPR045142 GO:0006914
Lja3g3106 849 Pfam Breast carcinoma amplified sequence 3 524 757 IPR022175 -
Lja3g3106 849 SMART WD40_4 197 232 IPR001680 GO:0005515
Lja3g3106 849 SMART WD40_4 375 415 IPR001680 GO:0005515
Lja3g3106 849 SMART WD40_4 431 472 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3106 Lja-Chr3 59178677 59186940 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3106 - - lja:Lj3g3v1544540.1 1419.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3106 3 59178677 59186940 Lja3g3106 3 59178677 59186940 PCT