Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3101 ATGCAAATGCGCTACTCCTACCTTAGAAATCTATGCACTGGGTTACGTTCACGTTTAGCCATTAACCGCGGTACTTCCAACCCTCAATCTTCTTCTTCTTCCAGACTCCATGAAATCTCTACGCTCTCAAGTCTCAAGCTTGAGCGACCCTCTGATTCAGGCGAGTCATCAGATGCGGTGTTTAAGCAGATTTCATCTATTTTCTACGGCGGTCAGTCGCTCGAGGGACCTGATGGTGCCAATGAGTCTGAAAGAGTGCAAAATATGTCATGGTTGTCAAATGTATCTCAGAACAATATATTGTTGCGGCGGAGAGACCATGCTCGTGAAAGGAAAAGAAAATTTGAGTTTGAATTTGCACAAGAAAGCCGTTTTCAGAAGTTAATTAAAATATGTGCTTTGAAACTAGGAACAGAGGCTGCTATTGAGTTGTTTGGTAAAGTGGGACGAGTACCGGGCTTGAAAGGATACAATGCATTGGTAGAAATATGCATAGACAAGGCTAGGGGAGCTGATGATGAAGACATTGCAATAGAAGAAATGGGCAAGGTTTTTCAACTTTTTAAATCAATGACGGAACAAGGTTTAAAGCTAGAGGAGCAAACATATCGCCCACTTCTTTTGTATGTAATTGACATGCATATGGTTGAAGAGTTTCAATTTTTCTGCCATGTTATCAAAGAAGAGAATCCCAGTTCTGTTACAAGACTGGGTTACTATGAATTGATGCTGTGGTTAAGAGTTAATAATGAAGAAAAGATTCAGGGTATCTATAACTATATTGCAGAGAATGATGGTCAGGACCCTTCTAATTTGCGAGAAAGCTATTTGTTGGCCCTTTGTGAGAGTGACCGGAAGGAGAAGATTTTGGAACTGTTGGAAATCATAGACATAAAAAAGCTTTCATCTGCCGAATCTGTAGCAAAGATATTTCAGGCATTAGGAAGGCTACTATTGGAACCGGTTGCGGAGAAGCTCCTTTTGGACTTCAAAACTAGTAATTATGAAGCCGATAATATTACAAACTTCATTGCTAGTTATGCTGTTAGCATTCCAAATTTATTGGTTGAGGATGTCATAACAAAATTCAAGGATTTACACCAAATGCTAGAAATTTCACCTTCTTCCTCGTCATACGAGAAGCTCATTTTACATAGCTGTGCATTGTTCAAGGTGCATGTCGCTCTCGATATAGTTGATGAAATGTGTGAAGCCGGCTTGGCATTATCAACTGAGGTGTTACACTCCATATTACAAATTTGTGATGAAACATCTGAATATAATTTGGTCCATCGGGTCTTCTCTACCATACGTCACTACAATCTGGAATCAAATGATGAAACGTTCAGACGTATGATAGATTTGTTCATGAAGATGAAAGATTTTGAAGGTGCATACAAGATGCTTGATGATTTGAAGGGAATGAATATGGTGCCGACAACAGGCATGTACAATGCCATAATGGCAGAATGTTTTCGAGAGAGAAACATTAGTGATGGGGTGAGGGTCTTTGAACAAATGCAATGTGCTGATATAAAACCTGATTCACAGACTTACAGCCATCTGATTTCCAACTCTGAAACTGAAGAAGATATAGTAAAGTATTATGAAGAACTGAAGCATTCTGGAATGAGAGCTACAAAGCAAATTTTCACGGCACTCATAAATGCTTACGCTTCGTGTGGACAGTTGGAGAAAGCAAAACAGGTAATCGTAGACCCATTGATACCAATGAGAAGCTTGAACCAAATCAAGAGTGTTCTTGTCTCAGTTCTTGCATCACATGGGCAATTGTTTGAGGCTTTTCTTATTTACGATGAAATCAAGCAAGCTGGACACACTCTAGAGCCAAAAGATGTTATGAGTCTCATTGAGCACATTCGTTCCGACGGAGAGTTGGATAGGTTGCTACTGCTACTTGAGGAATTGAAAGGTACAGACCATTGGAATGATGCTTGCTGCAGAATCATCTTGTACTGTATTTGGAATGAACATTTAAGTTCTGCTATTGACTTGTGTAAGCTCCTCAAGGAAAAGCTCGAAAGTGATGAAAAATTTATGGAGGTTCTCTTTGATAAGGTATTTTCGCTAATTGAACGGTCAGAGTCGAATCATCTGAACACTTGTCTCAATTTGCTTTCAGAAATCAGGGATAAAATTGGCACTTTGCCTTCACAGAAATGTTATGATTCTCTATTTTGTGCTCCTGCTGACGCCATTGATTCTGAATGA 2232 0.3947 MQMRYSYLRNLCTGLRSRLAINRGTSNPQSSSSSRLHEISTLSSLKLERPSDSGESSDAVFKQISSIFYGGQSLEGPDGANESERVQNMSWLSNVSQNNILLRRRDHARERKRKFEFEFAQESRFQKLIKICALKLGTEAAIELFGKVGRVPGLKGYNALVEICIDKARGADDEDIAIEEMGKVFQLFKSMTEQGLKLEEQTYRPLLLYVIDMHMVEEFQFFCHVIKEENPSSVTRLGYYELMLWLRVNNEEKIQGIYNYIAENDGQDPSNLRESYLLALCESDRKEKILELLEIIDIKKLSSAESVAKIFQALGRLLLEPVAEKLLLDFKTSNYEADNITNFIASYAVSIPNLLVEDVITKFKDLHQMLEISPSSSSYEKLILHSCALFKVHVALDIVDEMCEAGLALSTEVLHSILQICDETSEYNLVHRVFSTIRHYNLESNDETFRRMIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCADIKPDSQTYSHLISNSETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKAKQVIVDPLIPMRSLNQIKSVLVSVLASHGQLFEAFLIYDEIKQAGHTLEPKDVMSLIEHIRSDGELDRLLLLLEELKGTDHWNDACCRIILYCIWNEHLSSAIDLCKLLKEKLESDEKFMEVLFDKVFSLIERSESNHLNTCLNLLSEIRDKIGTLPSQKCYDSLFCAPADAIDSE* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3101 743 Pfam Pentacotripeptide-repeat region of PRORP 385 540 IPR033443 -
Lja3g3101 743 PANTHER OS02G0132600 PROTEIN 75 741 - -
Lja3g3101 743 TIGRFAM PPR: pentatricopeptide repeat domain 483 516 IPR002885 -
Lja3g3101 743 Pfam PPR repeat 587 612 IPR002885 -
Lja3g3101 743 Pfam PPR repeat 551 570 IPR002885 -
Lja3g3101 743 Gene3D Tetratricopeptide repeat domain 355 528 IPR011990 GO:0005515
Lja3g3101 743 PANTHER OS02G0132600 PROTEIN 75 741 - -
Lja3g3101 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 480 514 IPR002885 -
Lja3g3101 743 Gene3D Tetratricopeptide repeat domain 529 685 IPR011990 GO:0005515
Lja3g3101 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 445 479 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3101 Lja-Chr3 59096172 59106750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3101 344 645 Glycosyltransferase AT1G05670 20.064 8.92e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3101 - - gmx:100306302 1049.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3101 3 59096172 59106750 Lja3g3101 3 59096172 59106750 PCT