Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3011 ATGAGTTTTCATAATCAAGTTTTCCGACATGGCCAACTCCTCCTTAATTTACTCGAAGCGTGCTCCACCGTTCGGTCCCTCAACACAACCAAATGCCTTCACGCACTCTCCGTCACACTGGGTCCTTTCCCAACGCAATCCATATTTTTCCACAACAACATCATCTCCTCTTATGCCTCTCACGGCGAGTTTCTTCATGCACGCAAGGTGTTCGACGCTTTGCCTGAGAAAACAGTCGTCTCTTACAACACGCTTATAACTGCTTATGGTCGACGTGGAAATGTAGGAGATGCTTGGAAGTTGCTCCGCCACATGAGAGAGAGCGGCTTCGTGCCTACCCAGTACACACTCACAGGGTTGCTAACGTGTGAATGGTTGAGTCTCTCTCAGGGGTTTCAGTTGCTAGCTTTGAGCATTAAAAATGGACTCTTTGATGCTGATGCTTTCGTCGGTACTGCCATGTTGGGCTTGTTTGGGAGGCATGGATGTTTGGATGAAGCATTTTTGGCATTTGAAGATATGCCCCAGAAGAGTTTAGTGACGTGGAATTCCATGTTGTCCTTGCTGGCGCGTAATGGTTTTGTTGAGGACTCTAAGGTTTTGTTTCGTGATCTTGTGAGATTGGGGATTTCTTTGTCAGAAGGTTCATTCGTGGCCCTTTTGTCTGGACTTGTTGATTCTGAAGAGGATTTGAAATATGGGGAACAGATACATGGTTTGATGACTAAGTCTGGGTTTGATTGTGAAATTAATGCAGTTAATTCTCTGATCCATGTCTATGTTAGGTGCAGAGCCATGTTCTCTGCAGAAAGATTGTTTGAGAAGGTTCCTATTCAAAATGTTGTGTCTTGGAATATGATCATTGATGCGTTGGTCAAAAGTGAGAGGCCACAAATGGCGATGGAGATGTTTATGAACATGTCCAGCAGAGGATTGATGCCAAGCCAGGCCACATTCCTGGCTGTTCTTGACTCATGTACTAGTTTGACAAACTTAGTATGTGGAGAATCTATCCATGCTAAGGTCATCGGGAGTGGTTTTGAATCTGATGTTATTGTGGGTACTGCATTGGTAAACTTTTATGCTAAATGTGATAAATTGGTTTCTGCCCATAACTGTTTTAATCAGATAGAAAAGAAGAATGTGGTTTCTTGGAATTCTTTGATATTGGGTTACTCAAATATGTGTTCTTCCAAGTCAATTCTATTATTACGGGAAATGCTTCAATTGGGTTACTTCCCTAATGAGTTTTCCTTTACAGCTGTTCTTAAGTCATCATCATTATCAAACCTACATCAGCTCCATGGTTTGGTTTTAAGAATGGGGTATGAGAGTTGTGAATATGTATTAAGCTCTCTTGCTATGGCTTACACTAGAAATGGTCTTTTAAATGAAGCACTTGCATTTGTTGAAGAATTTAACTACCCACTTCCTGTAATCCCATCTAACATCATTGCTGGAGTGTACAACAGAACCGGCCGGTACTATGAAACAATAAAGTTGCTTTCTTTGCTAGAAGAACCTGATGTTGTATCTTGGAACATTGTCATTTCTGCTTGTGCTCGGAGCAACAATTATAACGAGGTTTTTGAGCTTTTCAAGCATATGCATTTCGCACGCATCCATCCAGATAAATACACATTTATGAGTGCATTATGTGTGTGCACCAAACTTTGCAGGCTTGATTTAGGAAGATCTCTTCATGGACTTATTATGAAGACCAATCTTTATGATTGTGACATATTTTTGAGCAATGCACTAATTGACATGTATGGGAAATGTGGAAGCATTGATAGTTCAGTGAAAGTTTTTGAAGAAATCACAAACAGAAATAGTATTACATTGACAGCTTTAATTTCTGCCCTTGGGCTGAATGGTTATGCTCGCGAGGCTGTAAAGAAGTTCCAAACCATGGAATTGTCGGGGTTGAAGCCTGATAAATTAGCTCTCAGAGCAGTACTTTCTTCTTGTAGATATGGTGGATTAGTGAGTGAAGGGATGAAAATTTTCAGGGAGATGGGTAACATTTATGGGATTCAACCTGAACTTGATCATTACTATTGCATAGTAGATCTTCTTGTTAAAAATGGACCAATTGAGGAAGCCGAAAAAATTATTGCAAGCATGCCTTTCCCACCAAATGCCAGCATTTGGCGTAGCTTTCTTGATGGCGGCTACAAGGGGCGAGAAATTGCAGTTTGA 2202 0.4101 MSFHNQVFRHGQLLLNLLEACSTVRSLNTTKCLHALSVTLGPFPTQSIFFHNNIISSYASHGEFLHARKVFDALPEKTVVSYNTLITAYGRRGNVGDAWKLLRHMRESGFVPTQYTLTGLLTCEWLSLSQGFQLLALSIKNGLFDADAFVGTAMLGLFGRHGCLDEAFLAFEDMPQKSLVTWNSMLSLLARNGFVEDSKVLFRDLVRLGISLSEGSFVALLSGLVDSEEDLKYGEQIHGLMTKSGFDCEINAVNSLIHVYVRCRAMFSAERLFEKVPIQNVVSWNMIIDALVKSERPQMAMEMFMNMSSRGLMPSQATFLAVLDSCTSLTNLVCGESIHAKVIGSGFESDVIVGTALVNFYAKCDKLVSAHNCFNQIEKKNVVSWNSLILGYSNMCSSKSILLLREMLQLGYFPNEFSFTAVLKSSSLSNLHQLHGLVLRMGYESCEYVLSSLAMAYTRNGLLNEALAFVEEFNYPLPVIPSNIIAGVYNRTGRYYETIKLLSLLEEPDVVSWNIVISACARSNNYNEVFELFKHMHFARIHPDKYTFMSALCVCTKLCRLDLGRSLHGLIMKTNLYDCDIFLSNALIDMYGKCGSIDSSVKVFEEITNRNSITLTALISALGLNGYAREAVKKFQTMELSGLKPDKLALRAVLSSCRYGGLVSEGMKIFREMGNIYGIQPELDHYYCIVDLLVKNGPIEEAEKIIASMPFPPNASIWRSFLDGGYKGREIAV* 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3011 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Lja3g3011 733 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 75 729 - -
Lja3g3011 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 78 112 IPR002885 -
Lja3g3011 733 Pfam PPR repeat 254 275 IPR002885 -
Lja3g3011 733 Pfam PPR repeat 180 210 IPR002885 -
Lja3g3011 733 Pfam PPR repeat 614 642 IPR002885 -
Lja3g3011 733 Pfam PPR repeat 152 177 IPR002885 -
Lja3g3011 733 Pfam PPR repeat 585 610 IPR002885 -
Lja3g3011 733 Pfam PPR repeat 52 76 IPR002885 -
Lja3g3011 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 212 IPR002885 -
Lja3g3011 733 Gene3D Tetratricopeptide repeat domain 583 732 IPR011990 GO:0005515
Lja3g3011 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 611 645 IPR002885 -
Lja3g3011 733 Gene3D Tetratricopeptide repeat domain 434 562 IPR011990 GO:0005515
Lja3g3011 733 Gene3D Tetratricopeptide repeat domain 12 125 IPR011990 GO:0005515
Lja3g3011 733 Gene3D Tetratricopeptide repeat domain 230 339 IPR011990 GO:0005515
Lja3g3011 733 Gene3D Tetratricopeptide repeat domain 340 433 IPR011990 GO:0005515
Lja3g3011 733 Gene3D Tetratricopeptide repeat domain 126 229 IPR011990 GO:0005515
Lja3g3011 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 509 543 IPR002885 -
Lja3g3011 733 PANTHER OS01G0754700 PROTEIN 75 729 - -
Lja3g3011 733 TIGRFAM PPR: pentatricopeptide repeat domain 511 544 IPR002885 -
Lja3g3011 733 TIGRFAM PPR: pentatricopeptide repeat domain 613 646 IPR002885 -
Lja3g3011 733 TIGRFAM PPR: pentatricopeptide repeat domain 282 315 IPR002885 -
Lja3g3011 733 TIGRFAM PPR: pentatricopeptide repeat domain 80 113 IPR002885 -
Lja3g3011 733 TIGRFAM PPR: pentatricopeptide repeat domain 180 213 IPR002885 -
Lja3g3011 733 Pfam PPR repeat family 280 326 IPR002885 -
Lja3g3011 733 Pfam PPR repeat family 508 552 IPR002885 -
Lja3g3011 733 Pfam PPR repeat family 77 122 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3011 Lja-Chr3 56146691 56148892 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3011 307 724 Glycoside Hydrolase AT3G49170 24.884 2.21e-31 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3011 - - aprc:113859666 1168.68