Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2909 ATGAAAGGTGTAGGGAAGAGGAGGACAACCTCGGAAACGTCGAACGATGCTGCTGGTGCTGTCGATTTCGGTGTTGTAGATGGAGGCGGAGGCGGAAGCGGAAGCGGAAGCGGAGGAGGAGGAGGAGGGTATGCTGCAGATGGTGCTTCTTTTGCTGAAGGAGAGCATACCCAGTTGCAGAAAGGGGAAGCGGAGCAACCCCGTGTGGAAGATTCGGAAGAAGAAGCTGCAGATTATGATGATGATGAAGAAGAAGAAGAAGAGGAGGAGGAAGAAGATGAGCATGCAGATCGGGTTGCAGTGTCTGGACCGGGAAAGGGTCCCATTCTCCGTGAAGGTTTCTATGAAGTTGAAGCTATACGTCGTAAGAGGATTCGTAGGGGTCAGCCGCAGTACTTAATCAAATGGCGTGATTGGTCAGAGGGATCCAATACTTGGGAGCCTCTAGAAAATCTTGCGAGTGTTCCTGATGTTGTTGCTGCTTTCGAGGCTAGCTTGAGATCAGCAAAGAGAAAGCGCAAACGCAAGCATGCGGTTCATCACATTCAGCCTAAGAAGAGGCTGGAGCGTTCTGCCACTCCTTACAGCCTCAGACAATTTCCGGCAAATACACCTGACAACCACCACACACAGTCTGCCCCTCTCAACGATATTAGTATTCCTGATATTCCTGCCTTTCCCCAGACTGTGCTTTTTGCGGATGAAGTTGAAAATAATGGTGATGCCAGCAGTCTCGGAAACTCTAATCATGCTCATGGTAATAGGTCTGCCGATGCTCCAGAAGCAGTTGTTGAAAGGAATGAGGAAAATGATTATGATCCTAAGCTTAGCGAACTTAGAGCTACGACCACCAACGGGTATGAAGGAGAAAACCTCGCAACACAGTTTCAAGAAACTCAACATTCAGTAGGAACTCGTCATGTTGATGGTCAACTAAATGGGGATTGCACAGAACCTGGTCAAAGTGGCCGCTGCAGAGGAGCTAAACGGAGAAAATCTGGTTCTGTTAAGAGGTTCAATAGAGATTCATATGCTGGTGACGAACCCGTTAATACTCAAAGACCAGTTGACGTATCTGCTGTTACAACTGAACAAGTACAAACAGGGGCTGCTGATAATGCGGGTCCAAATGGCCATAAGAGGACGAATCACGCTAGACCTGCCTGCACTATTGTCAAGATTATTAAGCCAGTACGCTATTCAGCTGCAGTAGCTAGCAGCATGCAGGATGCTTCAGTAACCTTCGTCGCTTTGAGGTCGGATGGAACAGAAGTGTTGGTTGATAACACATATCTCAAGGCATACTATCCCATTCTGCTAATCAATTACTACGAGCAGCATCTCCGCTACACTCCTGAACATTACTGA 1368 0.4781 MKGVGKRRTTSETSNDAAGAVDFGVVDGGGGGSGSGSGGGGGGYAADGASFAEGEHTQLQKGEAEQPRVEDSEEEAADYDDDEEEEEEEEEEDEHADRVAVSGPGKGPILREGFYEVEAIRRKRIRRGQPQYLIKWRDWSEGSNTWEPLENLASVPDVVAAFEASLRSAKRKRKRKHAVHHIQPKKRLERSATPYSLRQFPANTPDNHHTQSAPLNDISIPDIPAFPQTVLFADEVENNGDASSLGNSNHAHGNRSADAPEAVVERNEENDYDPKLSELRATTTNGYEGENLATQFQETQHSVGTRHVDGQLNGDCTEPGQSGRCRGAKRRKSGSVKRFNRDSYAGDEPVNTQRPVDVSAVTTEQVQTGAADNAGPNGHKRTNHARPACTIVKIIKPVRYSAAVASSMQDASVTFVALRSDGTEVLVDNTYLKAYYPILLINYYEQHLRYTPEHY* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2909 455 ProSiteProfiles Chromo and chromo shadow domain profile. 115 174 IPR000953 -
Lja3g2909 455 SMART ChS_2 380 453 IPR008251 GO:0005634
Lja3g2909 455 MobiDBLite consensus disorder prediction 259 276 - -
Lja3g2909 455 Coils Coil 69 92 - -
Lja3g2909 455 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 1 453 - -
Lja3g2909 455 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 1 453 IPR044251 GO:0006325|GO:0031507
Lja3g2909 455 SUPERFAMILY Chromo domain-like 101 170 IPR016197 -
Lja3g2909 455 MobiDBLite consensus disorder prediction 170 220 - -
Lja3g2909 455 Gene3D - 110 180 - -
Lja3g2909 455 MobiDBLite consensus disorder prediction 238 278 - -
Lja3g2909 455 Pfam Chromo (CHRromatin Organisation MOdifier) domain 115 163 IPR023780 -
Lja3g2909 455 MobiDBLite consensus disorder prediction 310 355 - -
Lja3g2909 455 MobiDBLite consensus disorder prediction 240 254 - -
Lja3g2909 455 MobiDBLite consensus disorder prediction 170 184 - -
Lja3g2909 455 MobiDBLite consensus disorder prediction 196 217 - -
Lja3g2909 455 MobiDBLite consensus disorder prediction 69 95 - -
Lja3g2909 455 CDD CD_CSD 115 164 - -
Lja3g2909 455 MobiDBLite consensus disorder prediction 1 108 - -
Lja3g2909 455 ProSitePatterns Chromo domain signature. 132 152 IPR023779 -
Lja3g2909 455 SMART chromo_7 114 167 IPR000953 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2909 - - aprc:113849713 491.115