Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2853 ATGTCTAGTCACTGGGGGATCCTTGTTTCAGATCCATGGCTTCAGAATCAGTTCACCCAAGCGGAGCTTCGCAGCTTGAAAACCCATTTCATGAGCATGAGGAGAGAGAGTGGGAAGCTTGTGATTGCTGATTTGGCTTCAAAGATGTCCAAGTTGAAGGTTGTGGGAGAAAATCTAAGTGAGGAGGAGAGAGCTTCTCACATCCAGGATTTGTATCCGAACACAGATGAAGAGGTTGATTTTGAATTGTTTCTTAAGGTTTACTTGAAACTACAAATATTTGTAAATTCTAGAATTGGAAGTAGTCCAAGGAACTCTTCGGCATTCCTAAAGGCGGCTACAACCACATTACTTCACACTATAAGTGAACCTGAGAAAGCATCATATGTTGCACATATAAATCACTATCTTGCACAAGATGAGTTCCTCAAGAAATCCCTTCCTATTGATCCTTCAACCAATGAGCTCTTTGAAATTGTGAAAGATGGTGTTCTTCTATGCAAGCTTATCAATGTGGCAGTTCCGAGGACTATTGATGAACGGGCGATCAATACAAAAAGATTACTCAATCCATGGGAAAGAAATGAAAATCACACTCTTTGTCTTAACTCTGCTAAGGCAATTGGATGTACAGTAGTTAACATTGGAACCCAGGACTTCATTGAAGGAAGACGTCATCTGGTGCTTGGGCTGATTTCACAGATTATTAAGATACAATTACTGGCGGACCTCAATCTAAAGAAAACTCCTCAGCTTCTTGAGTTACTTGGTGATAGTAAGGATATGGAAGAGTTGATGAATCTTCCACCAGAAAAGATCTTGTTAAGGTGGATGAATTTCCATTTGAAGAAGGCAGAGTACAAGAAGATTGTGACCAACTTCTCCTCTGATGTGAAGGATGCTGAGGCTTATGCCCACCTTCTAAATGTTCTTGCGCCTGAATACGCTAATCCCTCCACACTGGCTGTTAAAAATCCATTTGAAAGAGCAAAGTTAGTCCTGGAACATGCTGATAAGATGGGTTGCAAGCGATACTTAACTGCAAGAGACATATTAGAAGGATCCCCAAATCTCAATCTTGCATTTGTTGCACATATTTTCCAGCACAGGAATGGACTTTCAGCCCTGACAAAACAAATTTCTCTGCTTGAAACTTTGCCTGATGATACCCAAGACTCTAGAGAAGAGAGAGCGTTTCGCCTTTGGATTAATAGTCTTGGAAATTCAGCCTATATCAACAATGTATTTGAGGATCTCAGAAACGGGTGGGTTCTTTTAGAGACTCTTGACAAGGTGTCACCAGGGATTGTCAATTGGAAGATCGCTAACAAGCCTCCAATTAAGATGCCATTTAGAAAAGTAGAGAACTGCAACCAAGTTGTGAAATTGGGGAAACAGCTCAAGTTTTCCTTGGTTAATGTTGCTGGAAATGATATTGTGCAGGGAAATAAAAAATTAATATTAGCTTATTTGTGGCAGTTGATGCGATGCAATATTCTCCAACTTCTGAAGAACTTGAGATTTCACTCTCATGGGAAGGAAATTACTGATGCTGATATTTTAGAATGGGCCAACAGCAAAGTTTGCAGCTCAGGAAGTCAAAGTCGCATGGGTAGTTTTAAGGATAAAAGTTTTTCAGATGGAATATTTTTCCTTGAGCTTCTTAGTTCTGTGCAGCCCAGAGCTGTTAGTTGGGGTCTTGTAACAAAAGGAGTAACAGACCAAGAGAAAACGATGAATGCCACCTACATTATCAGTATTGCAAGAAAGCTTGGATGTTCTATATTCTTGCTTCCTGAAGACATCACTGAGGTGAATCAAAAGATGATCCTTACACTTACAGCTAGTATAATGTATTGGTTCCTAAAACACCCTCATGAAGAACGGACAATTGGAACTTCAGATAGTGAGAGTGGGAATCAATTGGAGACTACATCAAATTCTACACTAGATGACTCTGCTTCTGATTCATCAGTAGATGAAAATGGAAACATGTAA 1998 0.3989 MSSHWGILVSDPWLQNQFTQAELRSLKTHFMSMRRESGKLVIADLASKMSKLKVVGENLSEEERASHIQDLYPNTDEEVDFELFLKVYLKLQIFVNSRIGSSPRNSSAFLKAATTTLLHTISEPEKASYVAHINHYLAQDEFLKKSLPIDPSTNELFEIVKDGVLLCKLINVAVPRTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGLISQIIKIQLLADLNLKKTPQLLELLGDSKDMEELMNLPPEKILLRWMNFHLKKAEYKKIVTNFSSDVKDAEAYAHLLNVLAPEYANPSTLAVKNPFERAKLVLEHADKMGCKRYLTARDILEGSPNLNLAFVAHIFQHRNGLSALTKQISLLETLPDDTQDSREERAFRLWINSLGNSAYINNVFEDLRNGWVLLETLDKVSPGIVNWKIANKPPIKMPFRKVENCNQVVKLGKQLKFSLVNVAGNDIVQGNKKLILAYLWQLMRCNILQLLKNLRFHSHGKEITDADILEWANSKVCSSGSQSRMGSFKDKSFSDGIFFLELLSSVQPRAVSWGLVTKGVTDQEKTMNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMYWFLKHPHEERTIGTSDSESGNQLETTSNSTLDDSASDSSVDENGNM* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2853 665 ProSiteProfiles Calponin homology (CH) domain profile. 268 371 IPR001715 GO:0005515
Lja3g2853 665 Gene3D - 389 506 IPR036872 -
Lja3g2853 665 Pfam Calponin homology (CH) domain 151 238 IPR001715 GO:0005515
Lja3g2853 665 Pfam Calponin homology (CH) domain 517 621 IPR001715 GO:0005515
Lja3g2853 665 Pfam Calponin homology (CH) domain 269 370 IPR001715 GO:0005515
Lja3g2853 665 Pfam Calponin homology (CH) domain 395 497 IPR001715 GO:0005515
Lja3g2853 665 PANTHER ACTIN-BINDING CALPONIN-LIKE (CH) DOMAIN PROTEIN 1 665 - -
Lja3g2853 665 MobiDBLite consensus disorder prediction 630 665 - -
Lja3g2853 665 ProSiteProfiles Calponin homology (CH) domain profile. 123 240 IPR001715 GO:0005515
Lja3g2853 665 SMART ch_5 395 497 IPR001715 GO:0005515
Lja3g2853 665 SMART ch_5 270 369 IPR001715 GO:0005515
Lja3g2853 665 SMART ch_5 125 238 IPR001715 GO:0005515
Lja3g2853 665 SMART ch_5 516 620 IPR001715 GO:0005515
Lja3g2853 665 Gene3D - 119 245 IPR036872 -
Lja3g2853 665 PANTHER FIMBRIN/PLASTIN 1 665 IPR039959 GO:0051015|GO:0051017
Lja3g2853 665 Gene3D - 507 619 IPR036872 -
Lja3g2853 665 ProSiteProfiles Calponin homology (CH) domain profile. 514 622 IPR001715 GO:0005515
Lja3g2853 665 Gene3D - 246 374 IPR036872 -
Lja3g2853 665 CDD CH 124 238 IPR001715 GO:0005515
Lja3g2853 665 CDD CH 394 496 IPR001715 GO:0005515
Lja3g2853 665 ProSiteProfiles Calponin homology (CH) domain profile. 393 499 IPR001715 GO:0005515
Lja3g2853 665 CDD CH 515 622 IPR001715 GO:0005515
Lja3g2853 665 CDD CH 269 369 IPR001715 GO:0005515
Lja3g2853 665 MobiDBLite consensus disorder prediction 634 665 - -
Lja3g2853 665 ProSitePatterns Actinin-type actin-binding domain signature 1. 395 404 IPR001589 -
Lja3g2853 665 SUPERFAMILY Calponin-homology domain, CH-domain 122 619 IPR036872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2853 Lja-Chr3 45566445 45580645 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2853 1 624 EF-hand Containing Proteins AT5G55400 64.856 0.0 852
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2853 - K17275 gmx:100799696 1220.68